Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 FAAP20-213ENST00000487186 3576 ntTSL 214.63□□□□□ -0.071e-7■■□□□ 12.2
DDX55Q8NHQ9 ACIN1-213ENST00000555053 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.233e-6■■□□□ 12.2
DDX55Q8NHQ9 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC24.19■■□□□ 1.462e-11■■□□□ 12.2
DDX55Q8NHQ9 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.432e-11■■□□□ 12.2
DDX55Q8NHQ9 SIVA1-204ENST00000553810 550 ntTSL 323■■□□□ 1.272e-11■■□□□ 12.2
DDX55Q8NHQ9 SIVA1-206ENST00000554013 461 ntTSL 1 (best)22.45■■□□□ 1.182e-11■■□□□ 12.2
DDX55Q8NHQ9 SIVA1-205ENST00000553819 856 ntTSL 322.29■■□□□ 1.162e-11■■□□□ 12.2
DDX55Q8NHQ9 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC20.34■□□□□ 0.852e-11■■□□□ 12.2
DDX55Q8NHQ9 SIVA1-208ENST00000556431 4142 ntTSL 212.01□□□□□ -0.492e-11■■□□□ 12.2
DDX55Q8NHQ9 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.125e-19■■□□□ 12.2
DDX55Q8NHQ9 ATXN2L-219ENST00000566007 471 ntTSL 311.31□□□□□ -0.65e-19■■□□□ 12.2
DDX55Q8NHQ9 CTDNEP1-209ENST00000574205 1506 ntTSL 539.69■■■■□ 3.943e-14■■□□□ 12.2
DDX55Q8NHQ9 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.82■■■□□ 2.853e-14■■□□□ 12.2
DDX55Q8NHQ9 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.73e-14■■□□□ 12.2
DDX55Q8NHQ9 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.823e-14■■□□□ 12.2
DDX55Q8NHQ9 H2AFZ-205ENST00000527366 435 ntTSL 315.93■□□□□ 0.143e-14■■□□□ 12.2
DDX55Q8NHQ9 CTDNEP1-205ENST00000570828 986 ntTSL 315.26■□□□□ 0.033e-14■■□□□ 12.2
DDX55Q8NHQ9 AC120057.3-201ENST00000570760 776 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.313e-14■■□□□ 12.2
DDX55Q8NHQ9 SET-204ENST00000372692 2850 ntTSL 1 (best) BASIC11.23□□□□□ -0.613e-14■■□□□ 12.2
DDX55Q8NHQ9 SET-205ENST00000409104 962 ntTSL 5 BASIC10.7□□□□□ -0.73e-14■■□□□ 12.2
DDX55Q8NHQ9 RPL35-205ENST00000495728 649 ntTSL 219.77■□□□□ 0.761e-63■■□□□ 12.2
DDX55Q8NHQ9 APRT-210ENST00000568575 490 ntTSL 215.85■□□□□ 0.133e-24■■□□□ 12.2
DDX55Q8NHQ9 APRT-206ENST00000567057 437 ntTSL 214.46□□□□□ -0.093e-24■■□□□ 12.2
DDX55Q8NHQ9 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.011e-7■■□□□ 12.2
DDX55Q8NHQ9 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.091e-7■■□□□ 12.2
DDX55Q8NHQ9 CYBA-203ENST00000562209 624 ntTSL 524.27■■□□□ 1.482e-13■■□□□ 12.2
DDX55Q8NHQ9 BAG6-247ENST00000439687 3104 ntTSL 2 BASIC13.4□□□□□ -0.262e-6■■□□□ 12.2
DDX55Q8NHQ9 BAG6-237ENST00000375976 3644 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.322e-6■■□□□ 12.2
DDX55Q8NHQ9 BAG6-235ENST00000362049 3626 ntTSL 2 BASIC12.58□□□□□ -0.42e-6■■□□□ 12.2
DDX55Q8NHQ9 BAG6-236ENST00000375964 3815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.432e-6■■□□□ 12.2
DDX55Q8NHQ9 BAG6-234ENST00000211379 3779 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.482e-6■■□□□ 12.2
DDX55Q8NHQ9 PANK3-201ENST00000239231 10506 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.292e-6■■□□□ 12.2
DDX55Q8NHQ9 SKIV2L-207ENST00000471818 706 ntTSL 519.66■□□□□ 0.745e-8■■□□□ 12.2
DDX55Q8NHQ9 SKIV2L-209ENST00000483553 1307 ntTSL 519.58■□□□□ 0.735e-8■■□□□ 12.2
DDX55Q8NHQ9 SKIV2L-213ENST00000491994 866 ntTSL 218.89■□□□□ 0.615e-8■■□□□ 12.2
DDX55Q8NHQ9 SKIV2L-206ENST00000470453 455 ntTSL 317.56■□□□□ 0.45e-8■■□□□ 12.2
DDX55Q8NHQ9 SKIV2L-204ENST00000465703 4507 ntTSL 1 (best)16.9■□□□□ 0.35e-8■■□□□ 12.2
DDX55Q8NHQ9 SKIV2L-208ENST00000474839 3378 ntTSL 212.48□□□□□ -0.415e-8■■□□□ 12.2
DDX55Q8NHQ9 SKIV2L-201ENST00000375394 3894 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.545e-8■■□□□ 12.2
DDX55Q8NHQ9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC26.17■■□□□ 1.782e-8■■□□□ 12.2
DDX55Q8NHQ9 POLR2F-212ENST00000492213 550 ntTSL 425.91■■□□□ 1.742e-8■■□□□ 12.2
DDX55Q8NHQ9 POLR2F-206ENST00000443002 1890 ntTSL 223.68■■□□□ 1.382e-8■■□□□ 12.2
DDX55Q8NHQ9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.192e-8■■□□□ 12.2
DDX55Q8NHQ9 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC18.71■□□□□ 0.592e-8■■□□□ 12.2
DDX55Q8NHQ9 POLR2F-209ENST00000483713 615 ntTSL 318.66■□□□□ 0.582e-8■■□□□ 12.2
DDX55Q8NHQ9 POLR2F-210ENST00000484894 551 ntTSL 416.82■□□□□ 0.282e-8■■□□□ 12.2
DDX55Q8NHQ9 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC15.81■□□□□ 0.122e-8■■□□□ 12.2
DDX55Q8NHQ9 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.491e-6■■□□□ 12.2
DDX55Q8NHQ9 TACO1-202ENST00000581120 2304 ntTSL 217.89■□□□□ 0.461e-6■■□□□ 12.2
DDX55Q8NHQ9 APOBEC3C-202ENST00000428892 1056 ntTSL 313.51□□□□□ -0.251e-7■■□□□ 12.2
DDX55Q8NHQ9 APOBEC3C-201ENST00000361441 2818 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.571e-7■■□□□ 12.2
DDX55Q8NHQ9 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.224e-6■■□□□ 12.2
DDX55Q8NHQ9 GNAI2-205ENST00000441156 2168 ntTSL 227.09■■□□□ 1.934e-6■■□□□ 12.2
DDX55Q8NHQ9 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC16.78■□□□□ 0.284e-6■■□□□ 12.2
DDX55Q8NHQ9 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.084e-6■■□□□ 12.2
DDX55Q8NHQ9 GNAI2-211ENST00000491100 3886 ntTSL 29.39□□□□□ -0.914e-6■■□□□ 12.2
DDX55Q8NHQ9 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.413e-7■■□□□ 12.2
DDX55Q8NHQ9 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.9■□□□□ 0.33e-7■■□□□ 12.2
DDX55Q8NHQ9 MKNK2-208ENST00000589441 803 ntTSL 515.36■□□□□ 0.053e-7■■□□□ 12.2
DDX55Q8NHQ9 MKNK2-206ENST00000587416 4093 ntTSL 213.47□□□□□ -0.253e-7■■□□□ 12.2
DDX55Q8NHQ9 MKNK2-213ENST00000591601 3582 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.43e-7■■□□□ 12.2
DDX55Q8NHQ9 MKNK2-211ENST00000591142 875 ntTSL 2 BASIC10.98□□□□□ -0.653e-7■■□□□ 12.2
DDX55Q8NHQ9 SLC9A3R1-204ENST00000581356 519 ntTSL 315.56■□□□□ 0.085e-49■■□□□ 12.2
DDX55Q8NHQ9 NDUFS7-206ENST00000535382 3050 ntTSL 215.14■□□□□ 0.012e-8■■□□□ 12.2
DDX55Q8NHQ9 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22.27■■□□□ 1.163e-6■■□□□ 12.2
DDX55Q8NHQ9 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.82■□□□□ 0.923e-6■■□□□ 12.2
DDX55Q8NHQ9 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.74■□□□□ 0.593e-6■■□□□ 12.2
DDX55Q8NHQ9 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.363e-6■■□□□ 12.2
DDX55Q8NHQ9 TSPAN17-208ENST00000514705 4445 ntTSL 214.64□□□□□ -0.073e-6■■□□□ 12.2
DDX55Q8NHQ9 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.073e-6■■□□□ 12.2
DDX55Q8NHQ9 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.223e-6■■□□□ 12.2
DDX55Q8NHQ9 ARAF-205ENST00000470206 646 ntTSL 59.2□□□□□ -0.943e-6■■□□□ 12.2
DDX55Q8NHQ9 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.635e-7■■□□□ 12.2
DDX55Q8NHQ9 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC23.48■■□□□ 1.352e-17■■□□□ 12.2
DDX55Q8NHQ9 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.282e-17■■□□□ 12.2
DDX55Q8NHQ9 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.75■■□□□ 1.072e-17■■□□□ 12.2
DDX55Q8NHQ9 HMGCR-202ENST00000343975 3681 ntTSL 1 (best) BASIC9.45□□□□□ -0.91e-27■■□□□ 12.2
DDX55Q8NHQ9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.94■■□□□ 1.11e-12■■□□□ 12.2
DDX55Q8NHQ9 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.111e-12■■□□□ 12.2
DDX55Q8NHQ9 ENSA-209ENST00000369016 923 ntTSL 5 BASIC10.95□□□□□ -0.661e-12■■□□□ 12.2
DDX55Q8NHQ9 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC33.74■■■□□ 2.991e-6■■□□□ 12.1
DDX55Q8NHQ9 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.61e-6■■□□□ 12.1
DDX55Q8NHQ9 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.88■■■□□ 2.531e-6■■□□□ 12.1
DDX55Q8NHQ9 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.441e-6■■□□□ 12.1
DDX55Q8NHQ9 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC29.83■■■□□ 2.371e-6■■□□□ 12.1
DDX55Q8NHQ9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC28.13■■■□□ 2.091e-6■■□□□ 12.1
DDX55Q8NHQ9 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.91e-6■■□□□ 12.1
DDX55Q8NHQ9 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.162e-12■■□□□ 12.1
DDX55Q8NHQ9 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.092e-12■■□□□ 12.1
DDX55Q8NHQ9 MGST1-213ENST00000539036 566 ntTSL 415.14■□□□□ 0.012e-12■■□□□ 12.1
DDX55Q8NHQ9 MGST1-204ENST00000396209 979 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.232e-12■■□□□ 12.1
DDX55Q8NHQ9 MGST1-217ENST00000542256 933 ntTSL 1 (best)13.5□□□□□ -0.252e-12■■□□□ 12.1
DDX55Q8NHQ9 EMC1-203ENST00000461353 2175 ntTSL 212.35□□□□□ -0.432e-12■■□□□ 12.1
DDX55Q8NHQ9 EMC1-201ENST00000375199 5408 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.482e-12■■□□□ 12.1
DDX55Q8NHQ9 EMC1-207ENST00000477853 6664 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.582e-12■■□□□ 12.1
DDX55Q8NHQ9 SAP18-207ENST00000607003 2234 ntAPPRIS ALT1 TSL 1 (best) BASIC9.52□□□□□ -0.892e-12■■□□□ 12.1
DDX55Q8NHQ9 EMC1-202ENST00000375208 4084 ntTSL 2 BASIC9.49□□□□□ -0.892e-12■■□□□ 12.1
DDX55Q8NHQ9 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.932e-12■■□□□ 12.1
DDX55Q8NHQ9 SAP18-203ENST00000467636 670 ntTSL 59.14□□□□□ -0.952e-12■■□□□ 12.1
DDX55Q8NHQ9 MGST1-219ENST00000624056 1842 nt8.43□□□□□ -1.062e-12■■□□□ 12.1
Retrieved 100 of 15,504 protein–RNA pairs in 82.4 ms