RNA–Protein interactions for RNA: ENST00000474839.5

SKIV2L-208, Transcript of Ski2 like RNA helicase, humanhuman

TSL 2

Gene SKIV2L, Length 3,378 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKIV2L-208ENST00000474839 NISCHQ9Y2I1 1504 aa23.34■■□□□ 1.33
SKIV2L-208ENST00000474839 SHROOM4Q9ULL8 1493 aa21■□□□□ 0.95
SKIV2L-208ENST00000474839 SUPT5HO00267 1087 aaKnown RBP20.86■□□□□ 0.93
SKIV2L-208ENST00000474839 DCAF8L2P0C7V8 631 aa20.57■□□□□ 0.88
SKIV2L-208ENST00000474839 PCGF6Q9BYE7 350 aa20.16■□□□□ 0.82
SKIV2L-208ENST00000474839 HRCP23327 699 aa20.01■□□□□ 0.79
SKIV2L-208ENST00000474839 PPARGC1BQ86YN6 1023 aaKnown RBP19.98■□□□□ 0.79
SKIV2L-208ENST00000474839 CHIC1Q5VXU3 224 aa19.97■□□□□ 0.79
SKIV2L-208ENST00000474839 MYO15BQ96JP2 1530 aa19.83■□□□□ 0.77
SKIV2L-208ENST00000474839 CCDC180Q9P1Z9 1646 aa19.82■□□□□ 0.76
SKIV2L-208ENST00000474839 LOC105371045A0A1W2PR82 267 aa19.78■□□□□ 0.76
SKIV2L-208ENST00000474839 ABCC9O60706 1549 aa19.77■□□□□ 0.75
SKIV2L-208ENST00000474839 EHMT2Q96KQ7 1210 aa19.61■□□□□ 0.73
SKIV2L-208ENST00000474839 ZCCHC6Q5VYS8 1495 aaKnown RBP19.51■□□□□ 0.71
SKIV2L-208ENST00000474839 FAM9AQ8IZU1 332 aaPredicted RBP19.43■□□□□ 0.7
SKIV2L-208ENST00000474839 TRIM26Q12899 539 aaPredicted RBP19.29■□□□□ 0.68
SKIV2L-208ENST00000474839 TRIM41Q8WV44 630 aa19.13■□□□□ 0.65
SKIV2L-208ENST00000474839 PELP1Q8IZL8 1130 aaKnown RBP19.09■□□□□ 0.65
SKIV2L-208ENST00000474839 DCAF1Q9Y4B6 1507 aa19.07■□□□□ 0.64
SKIV2L-208ENST00000474839 SCRIBQ14160 1630 aa19.02■□□□□ 0.63
SKIV2L-208ENST00000474839 PABPN1Q86U42 306 aaKnown RBP eCLIP19■□□□□ 0.632e-6■■■□□ 17.4
SKIV2L-208ENST00000474839 TTBK1Q5TCY1 1321 aaPredicted RBP19■□□□□ 0.63
SKIV2L-208ENST00000474839 ZEB1P37275 1124 aaPredicted RBP18.91■□□□□ 0.62
SKIV2L-208ENST00000474839 SCAF1Q9H7N4 1312 aaKnown RBP18.83■□□□□ 0.6
SKIV2L-208ENST00000474839 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.82■□□□□ 0.6
SKIV2L-208ENST00000474839 CCER1Q8TC90 406 aaPredicted RBP18.77■□□□□ 0.6
SKIV2L-208ENST00000474839 MYT1Q01538 1121 aa18.71■□□□□ 0.59
SKIV2L-208ENST00000474839 NACADO15069 1562 aa18.68■□□□□ 0.58
SKIV2L-208ENST00000474839 RB1CC1Q8TDY2 1594 aa18.64■□□□□ 0.57
SKIV2L-208ENST00000474839 RSF1Q96T23 1441 aaPredicted RBP18.61■□□□□ 0.57
SKIV2L-208ENST00000474839 NEUROD1Q13562 356 aa18.52■□□□□ 0.56
SKIV2L-208ENST00000474839 CECR2Q9BXF3 1484 aa18.52■□□□□ 0.56
SKIV2L-208ENST00000474839 YTHDC1Q96MU7 727 aaKnown RBP18.5■□□□□ 0.55
SKIV2L-208ENST00000474839 DIEXFQ68CQ4 756 aaKnown RBP18.47■□□□□ 0.55
SKIV2L-208ENST00000474839 GTF3C3Q9Y5Q9 886 aa18.47■□□□□ 0.55
SKIV2L-208ENST00000474839 ACIN1Q9UKV3 1341 aaKnown RBP18.45■□□□□ 0.54
SKIV2L-208ENST00000474839 CENPBP07199 599 aaPredicted RBP18.38■□□□□ 0.53
SKIV2L-208ENST00000474839 UBTFP17480 764 aaKnown RBP18.34■□□□□ 0.53
SKIV2L-208ENST00000474839 RANGAP1P46060 587 aaPredicted RBP18.34■□□□□ 0.53
SKIV2L-208ENST00000474839 MROH2BQ7Z745 1585 aa18.25■□□□□ 0.51
SKIV2L-208ENST00000474839 HNRNPUL2Q1KMD3 747 aaKnown RBP18.25■□□□□ 0.51
SKIV2L-208ENST00000474839 UNC13AQ9UPW8 1703 aa18.21■□□□□ 0.51
SKIV2L-208ENST00000474839 BICRAQ9NZM4 1560 aa18.13■□□□□ 0.49
SKIV2L-208ENST00000474839 ZNF316A6NFI3 1004 aaPredicted RBP18.1■□□□□ 0.49
SKIV2L-208ENST00000474839 WIZO95785 1651 aa18.09■□□□□ 0.49
SKIV2L-208ENST00000474839 MIER1Q8N108 512 aa18.04■□□□□ 0.48
SKIV2L-208ENST00000474839 CSRNP3Q8WYN3 585 aa18■□□□□ 0.47
SKIV2L-208ENST00000474839 APLP2Q06481 763 aa17.99■□□□□ 0.47
SKIV2L-208ENST00000474839 CEP162Q5TB80 1403 aa17.99■□□□□ 0.47
SKIV2L-208ENST00000474839 ABCC8Q09428 1581 aa17.99■□□□□ 0.47
SKIV2L-208ENST00000474839 SOGA1O94964 1423 aa17.98■□□□□ 0.47
SKIV2L-208ENST00000474839 CCDC88BA6NC98 1476 aa17.97■□□□□ 0.47
SKIV2L-208ENST00000474839 BAZ1AQ9NRL2 1556 aaPredicted RBP17.95■□□□□ 0.46
SKIV2L-208ENST00000474839 PRKCSHP14314 528 aaPredicted RBP17.89■□□□□ 0.45
SKIV2L-208ENST00000474839 SMARCA4P51532 1647 aa17.88■□□□□ 0.45
SKIV2L-208ENST00000474839 RUSC2Q8N2Y8 1516 aa17.86■□□□□ 0.45
SKIV2L-208ENST00000474839 DNAJC5BQ9UF47 199 aa17.81■□□□□ 0.44
SKIV2L-208ENST00000474839 ITGAEP38570 1179 aa17.8■□□□□ 0.44
SKIV2L-208ENST00000474839 TNIKQ9UKE5 1360 aa17.78■□□□□ 0.44
SKIV2L-208ENST00000474839 ATAD2BQ9ULI0 1458 aa17.73■□□□□ 0.43
SKIV2L-208ENST00000474839 BAZ1BQ9UIG0 1483 aaKnown RBP17.71■□□□□ 0.43
SKIV2L-208ENST00000474839 WRNQ14191 1432 aaPredicted RBP eCLIP17.7■□□□□ 0.42
SKIV2L-208ENST00000474839 EIF4G1Q04637 1599 aaKnown RBP17.69■□□□□ 0.42
SKIV2L-208ENST00000474839 BCANQ96GW7 911 aa17.63■□□□□ 0.41
SKIV2L-208ENST00000474839 CLIP1P30622 1438 aa17.62■□□□□ 0.41
SKIV2L-208ENST00000474839 TOP2AP11388 1531 aaKnown RBP17.61■□□□□ 0.41
SKIV2L-208ENST00000474839 GOLGA3Q08378 1498 aa17.61■□□□□ 0.41
SKIV2L-208ENST00000474839 SMARCA2P51531 1590 aa17.55■□□□□ 0.4
SKIV2L-208ENST00000474839 BCL11AQ9H165 835 aa17.52■□□□□ 0.39
SKIV2L-208ENST00000474839 ATP1B4Q9UN42 357 aaPredicted RBP17.51■□□□□ 0.39
SKIV2L-208ENST00000474839 SUPT16HQ9Y5B9 1047 aaKnown RBP17.51■□□□□ 0.39
SKIV2L-208ENST00000474839 EEA1Q15075 1411 aa17.5■□□□□ 0.39
SKIV2L-208ENST00000474839 KANK4Q5T7N3 995 aaPredicted RBP17.49■□□□□ 0.39
SKIV2L-208ENST00000474839 KCNH8Q96L42 1107 aa17.49■□□□□ 0.39
SKIV2L-208ENST00000474839 CC2D2AQ9P2K1 1620 aa17.48■□□□□ 0.39
SKIV2L-208ENST00000474839 HIRIP3Q9BW71 556 aaPredicted RBP17.44■□□□□ 0.38
SKIV2L-208ENST00000474839 CEP164Q9UPV0 1460 aa17.43■□□□□ 0.38
SKIV2L-208ENST00000474839 RAPGEF2Q9Y4G8 1499 aa17.42■□□□□ 0.38
SKIV2L-208ENST00000474839 VPS8Q8N3P4 1428 aa17.41■□□□□ 0.38
SKIV2L-208ENST00000474839 NCAPD3P42695 1498 aa17.4■□□□□ 0.38
SKIV2L-208ENST00000474839 DDX10Q13206 875 aaKnown RBP17.38■□□□□ 0.37
SKIV2L-208ENST00000474839 FKBP8Q14318 412 aa17.34■□□□□ 0.37
SKIV2L-208ENST00000474839 DHX57Q6P158 1386 aaKnown RBP17.34■□□□□ 0.37
SKIV2L-208ENST00000474839 ERICH6Q7L0X2 663 aa17.34■□□□□ 0.37
SKIV2L-208ENST00000474839 FAM50AQ14320 339 aaKnown RBP17.33■□□□□ 0.36
SKIV2L-208ENST00000474839 PEG3Q9GZU2 1588 aa17.33■□□□□ 0.36
SKIV2L-208ENST00000474839 NESP48681 1621 aa17.32■□□□□ 0.36
SKIV2L-208ENST00000474839 P3H3Q8IVL6 736 aa17.31■□□□□ 0.36
SKIV2L-208ENST00000474839 TSHZ2Q9NRE2 1034 aa17.31■□□□□ 0.36
SKIV2L-208ENST00000474839 TRIM52Q96A61 297 aa17.3■□□□□ 0.36
SKIV2L-208ENST00000474839 SIN3AQ96ST3 1273 aa17.29■□□□□ 0.36
SKIV2L-208ENST00000474839 SYNJ1O43426 1573 aa17.28■□□□□ 0.36
SKIV2L-208ENST00000474839 NEFLP07196 543 aa17.23■□□□□ 0.35
SKIV2L-208ENST00000474839 KIF21BO75037 1637 aa17.22■□□□□ 0.35
SKIV2L-208ENST00000474839 CADPSQ9ULU8 1353 aa17.2■□□□□ 0.34
SKIV2L-208ENST00000474839 HMGXB3Q12766 1538 aa17.19■□□□□ 0.34
SKIV2L-208ENST00000474839 CLSPNQ9HAW4 1339 aa17.16■□□□□ 0.34
SKIV2L-208ENST00000474839 ANP32EQ9BTT0 268 aa17.15■□□□□ 0.34
SKIV2L-208ENST00000474839 CCNB3Q8WWL7 1395 aa17.14■□□□□ 0.33
SKIV2L-208ENST00000474839 IRX6P78412 446 aaPredicted RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms