Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 AL033527.3-201ENST00000566366 1196 ntBASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 AC012317.2-201ENST00000623305 2251 ntBASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC15.5■□□□□ 0.07
CLRN3Q8NCR9 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 THA1P-201ENST00000590384 1145 ntBASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 BX119927.1-201ENST00000636596 1552 ntBASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC15.49■□□□□ 0.07
CLRN3Q8NCR9 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 AP006587.3-201ENST00000525742 1516 ntBASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms