Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
RFX4Q33E94 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.05■□□□□ 0.48
RFX4Q33E94 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
RFX4Q33E94 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
RFX4Q33E94 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.05■□□□□ 0.48
RFX4Q33E94 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.05■□□□□ 0.48
RFX4Q33E94 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
RFX4Q33E94 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.05■□□□□ 0.48
RFX4Q33E94 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
RFX4Q33E94 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.05■□□□□ 0.48
RFX4Q33E94 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.05■□□□□ 0.48
RFX4Q33E94 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.05■□□□□ 0.48
RFX4Q33E94 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
RFX4Q33E94 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.05■□□□□ 0.48
RFX4Q33E94 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.05■□□□□ 0.48
RFX4Q33E94 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
RFX4Q33E94 AC090164.3-201ENST00000610780 2143 ntBASIC18.05■□□□□ 0.48
RFX4Q33E94 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
RFX4Q33E94 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
RFX4Q33E94 KRT8P20-201ENST00000423953 1409 ntBASIC18.05■□□□□ 0.48
RFX4Q33E94 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RFX4Q33E94 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.04■□□□□ 0.48
RFX4Q33E94 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.04■□□□□ 0.48
RFX4Q33E94 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
RFX4Q33E94 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.04■□□□□ 0.48
RFX4Q33E94 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
RFX4Q33E94 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.04■□□□□ 0.48
RFX4Q33E94 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.04■□□□□ 0.48
RFX4Q33E94 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.04■□□□□ 0.48
RFX4Q33E94 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.04■□□□□ 0.48
RFX4Q33E94 AC100791.3-201ENST00000617619 330 ntBASIC18.04■□□□□ 0.48
RFX4Q33E94 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
RFX4Q33E94 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.04■□□□□ 0.48
RFX4Q33E94 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RFX4Q33E94 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
RFX4Q33E94 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.03■□□□□ 0.48
RFX4Q33E94 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.03■□□□□ 0.48
RFX4Q33E94 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.03■□□□□ 0.48
RFX4Q33E94 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.03■□□□□ 0.48
RFX4Q33E94 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.03■□□□□ 0.48
RFX4Q33E94 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.03■□□□□ 0.48
RFX4Q33E94 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.03■□□□□ 0.48
RFX4Q33E94 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
RFX4Q33E94 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.03■□□□□ 0.48
RFX4Q33E94 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.03■□□□□ 0.48
RFX4Q33E94 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
RFX4Q33E94 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.03■□□□□ 0.48
RFX4Q33E94 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RFX4Q33E94 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RFX4Q33E94 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
RFX4Q33E94 AC104581.1-202ENST00000635932 2618 ntBASIC18.02■□□□□ 0.48
RFX4Q33E94 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RFX4Q33E94 AC141586.3-201ENST00000562166 1838 ntBASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms