Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LDLRP01130 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
LDLRP01130 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LDLRP01130 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LDLRP01130 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.72■□□□□ 0.59
LDLRP01130 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.72■□□□□ 0.59
LDLRP01130 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.72■□□□□ 0.59
LDLRP01130 RPPH1-201ENST00000516869 333 ntBASIC18.72■□□□□ 0.59
LDLRP01130 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.72■□□□□ 0.59
LDLRP01130 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
LDLRP01130 LINC01023-201ENST00000606054 436 ntBASIC18.72■□□□□ 0.59
LDLRP01130 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
LDLRP01130 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LDLRP01130 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LDLRP01130 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LDLRP01130 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
LDLRP01130 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.72■□□□□ 0.59
LDLRP01130 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.72■□□□□ 0.59
LDLRP01130 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LDLRP01130 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LDLRP01130 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.72■□□□□ 0.59
LDLRP01130 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.72■□□□□ 0.59
LDLRP01130 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
LDLRP01130 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LDLRP01130 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
LDLRP01130 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDLRP01130 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
LDLRP01130 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.71■□□□□ 0.59
LDLRP01130 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LDLRP01130 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDLRP01130 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDLRP01130 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.71■□□□□ 0.59
LDLRP01130 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.71■□□□□ 0.59
LDLRP01130 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.71■□□□□ 0.59
LDLRP01130 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
LDLRP01130 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.71■□□□□ 0.59
LDLRP01130 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDLRP01130 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDLRP01130 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDLRP01130 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDLRP01130 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LDLRP01130 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
LDLRP01130 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
LDLRP01130 LSM12P1-201ENST00000411836 588 ntBASIC18.71■□□□□ 0.59
LDLRP01130 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LDLRP01130 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
LDLRP01130 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LDLRP01130 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.71■□□□□ 0.59
LDLRP01130 KRT8P36-201ENST00000489121 1440 ntBASIC18.71■□□□□ 0.59
LDLRP01130 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.71■□□□□ 0.59
LDLRP01130 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDLRP01130 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.71■□□□□ 0.59
LDLRP01130 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
LDLRP01130 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
LDLRP01130 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.7■□□□□ 0.58
LDLRP01130 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LDLRP01130 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.7■□□□□ 0.58
LDLRP01130 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.7■□□□□ 0.58
LDLRP01130 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.7■□□□□ 0.58
LDLRP01130 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
LDLRP01130 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LDLRP01130 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LDLRP01130 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LDLRP01130 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LDLRP01130 SNORA78-201ENST00000459373 127 ntBASIC18.7■□□□□ 0.58
LDLRP01130 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.7■□□□□ 0.58
LDLRP01130 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.7■□□□□ 0.58
LDLRP01130 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.7■□□□□ 0.58
LDLRP01130 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.7■□□□□ 0.58
LDLRP01130 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.7■□□□□ 0.58
LDLRP01130 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.7■□□□□ 0.58
LDLRP01130 Z99916.2-201ENST00000604037 246 ntBASIC18.7■□□□□ 0.58
LDLRP01130 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.7■□□□□ 0.58
LDLRP01130 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
LDLRP01130 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.7■□□□□ 0.58
LDLRP01130 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LDLRP01130 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LDLRP01130 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LDLRP01130 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LDLRP01130 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LDLRP01130 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.69■□□□□ 0.58
LDLRP01130 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.69■□□□□ 0.58
LDLRP01130 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDLRP01130 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDLRP01130 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
LDLRP01130 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
LDLRP01130 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LDLRP01130 KRT16P2-201ENST00000414673 1423 ntBASIC18.69■□□□□ 0.58
LDLRP01130 RBM17P2-201ENST00000616397 1405 ntBASIC18.69■□□□□ 0.58
LDLRP01130 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDLRP01130 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.69■□□□□ 0.58
LDLRP01130 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.69■□□□□ 0.58
LDLRP01130 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDLRP01130 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.69■□□□□ 0.58
LDLRP01130 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.69■□□□□ 0.58
LDLRP01130 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.69■□□□□ 0.58
LDLRP01130 C1QBPP2-201ENST00000528754 825 ntBASIC18.69■□□□□ 0.58
LDLRP01130 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.69■□□□□ 0.58
LDLRP01130 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.69■□□□□ 0.58
LDLRP01130 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms