Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEMA3DO95025 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
SEMA3DO95025 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.59■□□□□ 0.57
SEMA3DO95025 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SEMA3DO95025 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.59■□□□□ 0.57
SEMA3DO95025 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.59■□□□□ 0.57
SEMA3DO95025 PRKY-204ENST00000533551 1019 ntBASIC18.59■□□□□ 0.57
SEMA3DO95025 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.59■□□□□ 0.57
SEMA3DO95025 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEMA3DO95025 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.59■□□□□ 0.57
SEMA3DO95025 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEMA3DO95025 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEMA3DO95025 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEMA3DO95025 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEMA3DO95025 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.59■□□□□ 0.57
SEMA3DO95025 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SEMA3DO95025 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SEMA3DO95025 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SEMA3DO95025 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEMA3DO95025 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.59■□□□□ 0.57
SEMA3DO95025 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEMA3DO95025 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SEMA3DO95025 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SEMA3DO95025 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SEMA3DO95025 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.58■□□□□ 0.57
SEMA3DO95025 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.58■□□□□ 0.57
SEMA3DO95025 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SEMA3DO95025 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SEMA3DO95025 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.58■□□□□ 0.57
SEMA3DO95025 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.58■□□□□ 0.57
SEMA3DO95025 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SEMA3DO95025 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEMA3DO95025 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.58■□□□□ 0.56
SEMA3DO95025 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.58■□□□□ 0.56
SEMA3DO95025 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SEMA3DO95025 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.58■□□□□ 0.56
SEMA3DO95025 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEMA3DO95025 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEMA3DO95025 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEMA3DO95025 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEMA3DO95025 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEMA3DO95025 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SEMA3DO95025 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEMA3DO95025 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
SEMA3DO95025 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.57■□□□□ 0.56
SEMA3DO95025 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEMA3DO95025 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.57■□□□□ 0.56
SEMA3DO95025 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SEMA3DO95025 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEMA3DO95025 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEMA3DO95025 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SEMA3DO95025 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.57■□□□□ 0.56
SEMA3DO95025 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SEMA3DO95025 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEMA3DO95025 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEMA3DO95025 KRT17P3-201ENST00000420566 1262 ntBASIC18.57■□□□□ 0.56
SEMA3DO95025 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.57■□□□□ 0.56
SEMA3DO95025 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.57■□□□□ 0.56
SEMA3DO95025 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.57■□□□□ 0.56
SEMA3DO95025 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SEMA3DO95025 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
SEMA3DO95025 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.57■□□□□ 0.56
SEMA3DO95025 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.57■□□□□ 0.56
SEMA3DO95025 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.57■□□□□ 0.56
SEMA3DO95025 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.57■□□□□ 0.56
SEMA3DO95025 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.57■□□□□ 0.56
SEMA3DO95025 AC069544.1-201ENST00000609399 999 ntBASIC18.57■□□□□ 0.56
SEMA3DO95025 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SEMA3DO95025 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SEMA3DO95025 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEMA3DO95025 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEMA3DO95025 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.57■□□□□ 0.56
SEMA3DO95025 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SEMA3DO95025 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SEMA3DO95025 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SEMA3DO95025 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.56■□□□□ 0.56
SEMA3DO95025 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
SEMA3DO95025 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
SEMA3DO95025 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SEMA3DO95025 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
SEMA3DO95025 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.56■□□□□ 0.56
SEMA3DO95025 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.56■□□□□ 0.56
SEMA3DO95025 TUBB8P6-201ENST00000436895 1288 ntBASIC18.56■□□□□ 0.56
SEMA3DO95025 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.56■□□□□ 0.56
SEMA3DO95025 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.56■□□□□ 0.56
SEMA3DO95025 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.56■□□□□ 0.56
SEMA3DO95025 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.56■□□□□ 0.56
SEMA3DO95025 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.56■□□□□ 0.56
SEMA3DO95025 ZNF815P-204ENST00000434898 1737 ntBASIC18.56■□□□□ 0.56
SEMA3DO95025 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SEMA3DO95025 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms