Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 AC098934.4-201ENST00000564127 592 ntBASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HIF3AQ9Y2N7 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 AL109923.1-201ENST00000618799 583 ntBASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.54■□□□□ 0.4
HIF3AQ9Y2N7 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 YBX1P10-201ENST00000444752 975 ntBASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 AC092666.2-201ENST00000613287 246 ntBASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 AC133041.1-202ENST00000642053 222 ntBASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HIF3AQ9Y2N7 ZNF815P-204ENST00000434898 1737 ntBASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms