Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
VPS28Q9UK41 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS28Q9UK41 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
VPS28Q9UK41 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.03■□□□□ 0.8
VPS28Q9UK41 C1QL1P1-201ENST00000568105 661 ntBASIC20.03■□□□□ 0.8
VPS28Q9UK41 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS28Q9UK41 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS28Q9UK41 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS28Q9UK41 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS28Q9UK41 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.02■□□□□ 0.8
VPS28Q9UK41 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
VPS28Q9UK41 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.02■□□□□ 0.8
VPS28Q9UK41 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS28Q9UK41 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS28Q9UK41 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS28Q9UK41 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.02■□□□□ 0.8
VPS28Q9UK41 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.02■□□□□ 0.8
VPS28Q9UK41 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS28Q9UK41 TSPY7P-201ENST00000431358 1114 ntBASIC20.02■□□□□ 0.8
VPS28Q9UK41 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS28Q9UK41 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.02■□□□□ 0.8
VPS28Q9UK41 AC073195.1-201ENST00000607241 877 ntBASIC20.02■□□□□ 0.8
VPS28Q9UK41 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
VPS28Q9UK41 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS28Q9UK41 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
VPS28Q9UK41 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
VPS28Q9UK41 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.02■□□□□ 0.8
VPS28Q9UK41 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.02■□□□□ 0.79
VPS28Q9UK41 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
VPS28Q9UK41 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.02■□□□□ 0.79
VPS28Q9UK41 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.02■□□□□ 0.79
VPS28Q9UK41 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
VPS28Q9UK41 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
VPS28Q9UK41 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS28Q9UK41 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
VPS28Q9UK41 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
VPS28Q9UK41 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
VPS28Q9UK41 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS28Q9UK41 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS28Q9UK41 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.01■□□□□ 0.79
VPS28Q9UK41 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS28Q9UK41 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS28Q9UK41 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS28Q9UK41 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.01■□□□□ 0.79
VPS28Q9UK41 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.01■□□□□ 0.79
VPS28Q9UK41 AL353708.3-201ENST00000610272 989 ntBASIC20.01■□□□□ 0.79
VPS28Q9UK41 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS28Q9UK41 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS28Q9UK41 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS28Q9UK41 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS28Q9UK41 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
VPS28Q9UK41 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS28Q9UK41 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS28Q9UK41 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20■□□□□ 0.79
VPS28Q9UK41 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS28Q9UK41 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20■□□□□ 0.79
VPS28Q9UK41 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS28Q9UK41 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS28Q9UK41 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS28Q9UK41 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
VPS28Q9UK41 FAM197Y1-201ENST00000421178 764 ntBASIC20■□□□□ 0.79
VPS28Q9UK41 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
VPS28Q9UK41 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20■□□□□ 0.79
VPS28Q9UK41 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20■□□□□ 0.79
VPS28Q9UK41 PENK-204ENST00000518770 863 ntTSL 2 BASIC20■□□□□ 0.79
VPS28Q9UK41 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20■□□□□ 0.79
VPS28Q9UK41 CD177P1-201ENST00000606252 935 ntBASIC20■□□□□ 0.79
VPS28Q9UK41 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
VPS28Q9UK41 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS28Q9UK41 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
VPS28Q9UK41 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS28Q9UK41 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS28Q9UK41 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS28Q9UK41 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS28Q9UK41 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS28Q9UK41 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS28Q9UK41 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS28Q9UK41 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS28Q9UK41 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS28Q9UK41 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS28Q9UK41 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS28Q9UK41 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS28Q9UK41 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS28Q9UK41 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
VPS28Q9UK41 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
VPS28Q9UK41 NIFKP9-201ENST00000419265 221 ntBASIC19.99■□□□□ 0.79
VPS28Q9UK41 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS28Q9UK41 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.99■□□□□ 0.79
VPS28Q9UK41 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.99■□□□□ 0.79
VPS28Q9UK41 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms