Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 TEX21P-204ENST00000641479 1693 ntBASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CCDC28BQ9BUN5 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC28BQ9BUN5 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
CCDC28BQ9BUN5 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC28BQ9BUN5 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC28BQ9BUN5 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC28BQ9BUN5 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 CYP2T3P-201ENST00000601990 817 ntBASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 AC018553.1-201ENST00000616682 1458 ntBASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 AC135050.7-201ENST00000624508 2218 ntBASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC28BQ9BUN5 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms