Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 KRT16P5-201ENST00000455284 522 ntBASIC17.86■□□□□ 0.45
TIMP4Q99727 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.86■□□□□ 0.45
TIMP4Q99727 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.86■□□□□ 0.45
TIMP4Q99727 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.86■□□□□ 0.45
TIMP4Q99727 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.86■□□□□ 0.45
TIMP4Q99727 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
TIMP4Q99727 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.86■□□□□ 0.45
TIMP4Q99727 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.86■□□□□ 0.45
TIMP4Q99727 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.86■□□□□ 0.45
TIMP4Q99727 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TIMP4Q99727 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.86■□□□□ 0.45
TIMP4Q99727 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
TIMP4Q99727 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TIMP4Q99727 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TIMP4Q99727 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TIMP4Q99727 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TIMP4Q99727 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TIMP4Q99727 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TIMP4Q99727 KRT16P6-202ENST00000425692 1426 ntBASIC17.85■□□□□ 0.45
TIMP4Q99727 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TIMP4Q99727 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TIMP4Q99727 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
TIMP4Q99727 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TIMP4Q99727 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TIMP4Q99727 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.85■□□□□ 0.45
TIMP4Q99727 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.85■□□□□ 0.45
TIMP4Q99727 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TIMP4Q99727 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TIMP4Q99727 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TIMP4Q99727 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.85■□□□□ 0.45
TIMP4Q99727 AL049637.2-201ENST00000641778 930 ntBASIC17.85■□□□□ 0.45
TIMP4Q99727 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TIMP4Q99727 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
TIMP4Q99727 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TIMP4Q99727 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TIMP4Q99727 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TIMP4Q99727 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.84■□□□□ 0.45
TIMP4Q99727 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TIMP4Q99727 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.84■□□□□ 0.45
TIMP4Q99727 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.84■□□□□ 0.45
TIMP4Q99727 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TIMP4Q99727 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
TIMP4Q99727 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TIMP4Q99727 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.84■□□□□ 0.45
TIMP4Q99727 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TIMP4Q99727 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TIMP4Q99727 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
TIMP4Q99727 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TIMP4Q99727 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TIMP4Q99727 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TIMP4Q99727 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TIMP4Q99727 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
TIMP4Q99727 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
TIMP4Q99727 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
TIMP4Q99727 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TIMP4Q99727 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TIMP4Q99727 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
TIMP4Q99727 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.83■□□□□ 0.45
TIMP4Q99727 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.83■□□□□ 0.44
TIMP4Q99727 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
TIMP4Q99727 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.83■□□□□ 0.44
TIMP4Q99727 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
TIMP4Q99727 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.83■□□□□ 0.44
TIMP4Q99727 AC004264.1-201ENST00000608354 794 ntBASIC17.83■□□□□ 0.44
TIMP4Q99727 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.83■□□□□ 0.44
TIMP4Q99727 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.83■□□□□ 0.44
TIMP4Q99727 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TIMP4Q99727 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.83■□□□□ 0.44
TIMP4Q99727 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
TIMP4Q99727 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TIMP4Q99727 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
TIMP4Q99727 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
TIMP4Q99727 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TIMP4Q99727 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms