Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC42Q96M95 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC42Q96M95 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 AL138781.2-201ENST00000617896 1843 ntBASIC20.98■□□□□ 0.95
CCDC42Q96M95 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CCDC42Q96M95 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC42Q96M95 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC42Q96M95 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC42Q96M95 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC42Q96M95 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC42Q96M95 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CCDC42Q96M95 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC42Q96M95 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC42Q96M95 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.97■□□□□ 0.95
CCDC42Q96M95 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CCDC42Q96M95 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC42Q96M95 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC42Q96M95 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC42Q96M95 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC42Q96M95 LSM12P1-201ENST00000411836 588 ntBASIC20.97■□□□□ 0.95
CCDC42Q96M95 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.97■□□□□ 0.95
CCDC42Q96M95 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.97■□□□□ 0.95
CCDC42Q96M95 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC42Q96M95 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC42Q96M95 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC42Q96M95 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.97■□□□□ 0.95
CCDC42Q96M95 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CCDC42Q96M95 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC42Q96M95 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC42Q96M95 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC42Q96M95 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC42Q96M95 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC42Q96M95 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC42Q96M95 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
CCDC42Q96M95 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.95
CCDC42Q96M95 NEFHP1-201ENST00000412845 2629 ntBASIC20.95■□□□□ 0.94
CCDC42Q96M95 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC42Q96M95 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC42Q96M95 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC42Q96M95 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CCDC42Q96M95 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC42Q96M95 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC42Q96M95 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC42Q96M95 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC42Q96M95 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC42Q96M95 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC42Q96M95 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC42Q96M95 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
CCDC42Q96M95 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC42Q96M95 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.95■□□□□ 0.94
CCDC42Q96M95 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC42Q96M95 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
CCDC42Q96M95 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC42Q96M95 CROCCP3-202ENST00000420820 1947 ntBASIC20.95■□□□□ 0.94
CCDC42Q96M95 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC42Q96M95 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC42Q96M95 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC42Q96M95 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CCDC42Q96M95 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC42Q96M95 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCDC42Q96M95 AC141586.3-201ENST00000562166 1838 ntBASIC20.94■□□□□ 0.94
CCDC42Q96M95 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC42Q96M95 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC42Q96M95 TFP1-202ENST00000475455 1573 ntBASIC20.94■□□□□ 0.94
CCDC42Q96M95 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms