Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS39Q96JC1 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.5■□□□□ 0.71
VPS39Q96JC1 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS39Q96JC1 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.5■□□□□ 0.71
VPS39Q96JC1 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.5■□□□□ 0.71
VPS39Q96JC1 AC005829.2-201ENST00000571422 1056 ntBASIC19.5■□□□□ 0.71
VPS39Q96JC1 AC004408.2-201ENST00000623613 2777 ntBASIC19.5■□□□□ 0.71
VPS39Q96JC1 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS39Q96JC1 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS39Q96JC1 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS39Q96JC1 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS39Q96JC1 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS39Q96JC1 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS39Q96JC1 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS39Q96JC1 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS39Q96JC1 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
VPS39Q96JC1 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS39Q96JC1 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS39Q96JC1 DUSP5P2-201ENST00000426873 1033 ntBASIC19.49■□□□□ 0.71
VPS39Q96JC1 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
VPS39Q96JC1 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS39Q96JC1 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS39Q96JC1 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS39Q96JC1 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS39Q96JC1 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
VPS39Q96JC1 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS39Q96JC1 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS39Q96JC1 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS39Q96JC1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS39Q96JC1 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS39Q96JC1 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS39Q96JC1 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
VPS39Q96JC1 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS39Q96JC1 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.48■□□□□ 0.71
VPS39Q96JC1 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
VPS39Q96JC1 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS39Q96JC1 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS39Q96JC1 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS39Q96JC1 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS39Q96JC1 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
VPS39Q96JC1 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
VPS39Q96JC1 AC083906.2-201ENST00000511578 360 ntBASIC19.48■□□□□ 0.71
VPS39Q96JC1 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
VPS39Q96JC1 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS39Q96JC1 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS39Q96JC1 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS39Q96JC1 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
VPS39Q96JC1 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS39Q96JC1 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS39Q96JC1 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS39Q96JC1 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS39Q96JC1 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS39Q96JC1 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
VPS39Q96JC1 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS39Q96JC1 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
VPS39Q96JC1 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS39Q96JC1 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS39Q96JC1 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS39Q96JC1 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS39Q96JC1 SLC29A4P1-201ENST00000398760 971 ntBASIC19.47■□□□□ 0.71
VPS39Q96JC1 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS39Q96JC1 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.47■□□□□ 0.71
VPS39Q96JC1 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.47■□□□□ 0.71
VPS39Q96JC1 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS39Q96JC1 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS39Q96JC1 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS39Q96JC1 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS39Q96JC1 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS39Q96JC1 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS39Q96JC1 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
VPS39Q96JC1 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS39Q96JC1 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS39Q96JC1 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS39Q96JC1 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS39Q96JC1 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS39Q96JC1 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS39Q96JC1 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS39Q96JC1 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 AC092118.2-201ENST00000613495 667 ntBASIC19.46■□□□□ 0.71
VPS39Q96JC1 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS39Q96JC1 LINC01465-201ENST00000408887 1940 ntBASIC19.46■□□□□ 0.71
VPS39Q96JC1 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
VPS39Q96JC1 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS39Q96JC1 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS39Q96JC1 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms