Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 BET1L-207ENST00000529614 560 ntTSL 5 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 POLI-202ENST00000406285 2030 ntTSL 2 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDLIM3Q53GG5 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 AL020996.1-203ENST00000536896 2307 ntBASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 PGM5P4-201ENST00000421970 445 ntBASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 KRT18P35-201ENST00000510488 1269 ntBASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 Z99916.2-201ENST00000604037 246 ntBASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 AC008694.1-202ENST00000636953 945 ntBASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 TREX1-205ENST00000625293 1783 ntBASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDLIM3Q53GG5 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 BMP1-204ENST00000397814 836 ntTSL 4 BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 CDV3P1-201ENST00000471403 739 ntBASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms