Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA1P55317 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA1P55317 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.84■□□□□ 0.61
FOXA1P55317 AC006970.2-201ENST00000450065 779 ntBASIC18.84■□□□□ 0.61
FOXA1P55317 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.84■□□□□ 0.61
FOXA1P55317 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.84■□□□□ 0.61
FOXA1P55317 AC092118.2-201ENST00000613495 667 ntBASIC18.84■□□□□ 0.61
FOXA1P55317 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA1P55317 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
FOXA1P55317 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
FOXA1P55317 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
FOXA1P55317 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
FOXA1P55317 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA1P55317 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.84■□□□□ 0.61
FOXA1P55317 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA1P55317 CROCCP3-202ENST00000420820 1947 ntBASIC18.84■□□□□ 0.61
FOXA1P55317 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA1P55317 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA1P55317 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA1P55317 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
FOXA1P55317 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.61
FOXA1P55317 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
FOXA1P55317 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
FOXA1P55317 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.83■□□□□ 0.61
FOXA1P55317 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA1P55317 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.83■□□□□ 0.6
FOXA1P55317 RPS2P52-201ENST00000469610 820 ntBASIC18.83■□□□□ 0.6
FOXA1P55317 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
FOXA1P55317 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
FOXA1P55317 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.83■□□□□ 0.6
FOXA1P55317 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.83■□□□□ 0.6
FOXA1P55317 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.83■□□□□ 0.6
FOXA1P55317 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
FOXA1P55317 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.83■□□□□ 0.6
FOXA1P55317 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
FOXA1P55317 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA1P55317 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA1P55317 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
FOXA1P55317 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA1P55317 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA1P55317 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA1P55317 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA1P55317 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
FOXA1P55317 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
FOXA1P55317 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.83■□□□□ 0.6
FOXA1P55317 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
FOXA1P55317 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA1P55317 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.82■□□□□ 0.6
FOXA1P55317 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
FOXA1P55317 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA1P55317 NEFHP1-201ENST00000412845 2629 ntBASIC18.82■□□□□ 0.6
FOXA1P55317 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA1P55317 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA1P55317 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA1P55317 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA1P55317 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.82■□□□□ 0.6
FOXA1P55317 MIR935-201ENST00000401179 91 ntBASIC18.82■□□□□ 0.6
FOXA1P55317 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.82■□□□□ 0.6
FOXA1P55317 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.82■□□□□ 0.6
FOXA1P55317 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA1P55317 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA1P55317 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.82■□□□□ 0.6
FOXA1P55317 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA1P55317 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA1P55317 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.82■□□□□ 0.6
FOXA1P55317 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
FOXA1P55317 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA1P55317 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA1P55317 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA1P55317 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA1P55317 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
FOXA1P55317 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA1P55317 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA1P55317 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.81■□□□□ 0.6
FOXA1P55317 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.81■□□□□ 0.6
FOXA1P55317 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA1P55317 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
FOXA1P55317 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
FOXA1P55317 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA1P55317 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA1P55317 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA1P55317 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA1P55317 SDHAP1-207ENST00000440850 2000 ntBASIC18.81■□□□□ 0.6
FOXA1P55317 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA1P55317 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.81■□□□□ 0.6
FOXA1P55317 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.8■□□□□ 0.6
FOXA1P55317 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
FOXA1P55317 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
FOXA1P55317 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA1P55317 AC006333.2-201ENST00000607957 2099 ntBASIC18.8■□□□□ 0.6
FOXA1P55317 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.8■□□□□ 0.6
FOXA1P55317 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA1P55317 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
FOXA1P55317 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA1P55317 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
FOXA1P55317 TSPY6P-201ENST00000448518 926 ntBASIC18.8■□□□□ 0.6
FOXA1P55317 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.8■□□□□ 0.6
FOXA1P55317 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.8■□□□□ 0.6
FOXA1P55317 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.8■□□□□ 0.6
FOXA1P55317 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms