Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CDX1P47902 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 INO80E-214ENST00000620599 515 ntTSL 2 BASIC15.82■□□□□ 0.12
CDX1P47902 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC15.82■□□□□ 0.12
CDX1P47902 TMEM191A-211ENST00000637163 1067 ntBASIC15.82■□□□□ 0.12
CDX1P47902 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CDX1P47902 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
CDX1P47902 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC15.82■□□□□ 0.12
CDX1P47902 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 AC020907.5-201ENST00000624372 1936 ntBASIC15.82■□□□□ 0.12
CDX1P47902 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
CDX1P47902 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CDX1P47902 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CDX1P47902 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CDX1P47902 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC15.82■□□□□ 0.12
CDX1P47902 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
CDX1P47902 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CDX1P47902 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC15.81■□□□□ 0.12
CDX1P47902 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC15.81■□□□□ 0.12
CDX1P47902 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC15.81■□□□□ 0.12
CDX1P47902 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC15.81■□□□□ 0.12
CDX1P47902 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC15.81■□□□□ 0.12
CDX1P47902 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 AC060766.5-201ENST00000590539 871 ntBASIC15.81■□□□□ 0.12
CDX1P47902 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 AL356652.1-201ENST00000615962 565 ntBASIC15.81■□□□□ 0.12
CDX1P47902 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDX1P47902 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CDX1P47902 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC15.8■□□□□ 0.12
CDX1P47902 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.8■□□□□ 0.12
CDX1P47902 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CDX1P47902 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC15.8■□□□□ 0.12
CDX1P47902 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CDX1P47902 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CDX1P47902 STAC-204ENST00000457375 1366 ntTSL 2 BASIC15.8■□□□□ 0.12
CDX1P47902 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC15.8■□□□□ 0.12
CDX1P47902 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC15.8■□□□□ 0.12
CDX1P47902 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 GAS7-202ENST00000396115 929 ntTSL 5 BASIC15.8■□□□□ 0.12
CDX1P47902 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC15.8■□□□□ 0.12
CDX1P47902 POU5F1P3-201ENST00000428824 1078 ntBASIC15.8■□□□□ 0.12
CDX1P47902 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CDX1P47902 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
CDX1P47902 MIR4651-201ENST00000582622 73 ntBASIC15.8■□□□□ 0.12
CDX1P47902 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC15.8■□□□□ 0.12
CDX1P47902 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC15.8■□□□□ 0.12
CDX1P47902 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC15.8■□□□□ 0.12
CDX1P47902 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC15.8■□□□□ 0.12
CDX1P47902 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.8■□□□□ 0.12
CDX1P47902 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC15.8■□□□□ 0.12
CDX1P47902 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDX1P47902 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CDX1P47902 AL162377.1-201ENST00000618844 1793 ntBASIC15.8■□□□□ 0.12
CDX1P47902 AC121338.2-201ENST00000622535 1744 ntBASIC15.8■□□□□ 0.12
CDX1P47902 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CDX1P47902 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms