Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.77■□□□□ 0.59
PCDHGA1Q9Y5H4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.77■□□□□ 0.59
PCDHGA1Q9Y5H4 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.77■□□□□ 0.59
PCDHGA1Q9Y5H4 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 AL671277.2-201ENST00000458060 996 ntBASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 AL121894.2-201ENST00000602977 491 ntBASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 AC008622.2-201ENST00000617006 1229 ntBASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PCDHGA1Q9Y5H4 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 FBXW4P1-201ENST00000426721 2239 ntBASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PCDHGA1Q9Y5H4 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 PLK5-205ENST00000642079 1969 ntBASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 AL450487.1-201ENST00000426799 995 ntBASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHGA1Q9Y5H4 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms