Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS29Q9UBQ0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 SOX15-203ENST00000570788 1093 ntBASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 AP000974.1-201ENST00000623909 2387 ntBASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS29Q9UBQ0 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 AC098818.2-201ENST00000564925 2320 ntBASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 AC008687.6-201ENST00000596318 630 ntBASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS29Q9UBQ0 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 YBX1P10-201ENST00000444752 975 ntBASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 AL121829.2-201ENST00000620908 328 ntBASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS29Q9UBQ0 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms