Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.21■□□□□ 0.83
ATG4AQ8WYN0 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
ATG4AQ8WYN0 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.2■□□□□ 0.82
ATG4AQ8WYN0 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 AL161938.1-201ENST00000569833 2180 ntBASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 AL137784.2-201ENST00000607332 1000 ntBASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 TEX21P-204ENST00000641479 1693 ntBASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
ATG4AQ8WYN0 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 MIPEPP3-201ENST00000412105 444 ntBASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 DUSP5P2-201ENST00000426873 1033 ntBASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 AC005829.2-201ENST00000571422 1056 ntBASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 AC006557.6-201ENST00000623071 864 ntBASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ATG4AQ8WYN0 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ATG4AQ8WYN0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.17■□□□□ 0.82
ATG4AQ8WYN0 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.17■□□□□ 0.82
ATG4AQ8WYN0 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
ATG4AQ8WYN0 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.17■□□□□ 0.82
ATG4AQ8WYN0 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
ATG4AQ8WYN0 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ATG4AQ8WYN0 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ATG4AQ8WYN0 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms