Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.77■□□□□ 0.92
CHD9Q3L8U1 AC112907.2-201ENST00000448639 330 ntBASIC20.77■□□□□ 0.92
CHD9Q3L8U1 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.77■□□□□ 0.92
CHD9Q3L8U1 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHD9Q3L8U1 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.77■□□□□ 0.92
CHD9Q3L8U1 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
CHD9Q3L8U1 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 AC092597.1-201ENST00000487352 616 ntBASIC20.76■□□□□ 0.91
CHD9Q3L8U1 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.76■□□□□ 0.91
CHD9Q3L8U1 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 EP400NL-214ENST00000641289 2402 ntBASIC20.75■□□□□ 0.91
CHD9Q3L8U1 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 FAAHP1-202ENST00000446499 1238 ntBASIC20.75■□□□□ 0.91
CHD9Q3L8U1 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHD9Q3L8U1 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 AP002383.4-201ENST00000442518 975 ntBASIC20.74■□□□□ 0.91
CHD9Q3L8U1 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.74■□□□□ 0.91
CHD9Q3L8U1 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHD9Q3L8U1 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 RNA5SP419-201ENST00000515908 135 ntBASIC20.73■□□□□ 0.91
CHD9Q3L8U1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 PRELID1P1-202ENST00000567272 903 ntBASIC20.73■□□□□ 0.91
CHD9Q3L8U1 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHD9Q3L8U1 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 TMEM179-206ENST00000616017 1645 ntBASIC20.72■□□□□ 0.91
CHD9Q3L8U1 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHD9Q3L8U1 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms