Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDH3P22223 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH3P22223 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
CDH3P22223 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CDH3P22223 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDH3P22223 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CDH3P22223 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CDH3P22223 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CDH3P22223 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.07■□□□□ 0.64
CDH3P22223 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDH3P22223 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDH3P22223 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.07■□□□□ 0.64
CDH3P22223 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH3P22223 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CDH3P22223 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDH3P22223 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
CDH3P22223 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH3P22223 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH3P22223 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDH3P22223 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CDH3P22223 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.06■□□□□ 0.64
CDH3P22223 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.06■□□□□ 0.64
CDH3P22223 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
CDH3P22223 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CDH3P22223 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.06■□□□□ 0.64
CDH3P22223 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.06■□□□□ 0.64
CDH3P22223 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CDH3P22223 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CDH3P22223 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
CDH3P22223 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDH3P22223 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CDH3P22223 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.06■□□□□ 0.64
CDH3P22223 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.06■□□□□ 0.64
CDH3P22223 AC018445.3-201ENST00000624177 1945 ntBASIC19.06■□□□□ 0.64
CDH3P22223 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CDH3P22223 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CDH3P22223 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.05■□□□□ 0.64
CDH3P22223 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.05■□□□□ 0.64
CDH3P22223 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
CDH3P22223 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.05■□□□□ 0.64
CDH3P22223 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.05■□□□□ 0.64
CDH3P22223 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CDH3P22223 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.05■□□□□ 0.64
CDH3P22223 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CDH3P22223 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.05■□□□□ 0.64
CDH3P22223 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.05■□□□□ 0.64
CDH3P22223 Z99916.2-201ENST00000604037 246 ntBASIC19.05■□□□□ 0.64
CDH3P22223 AC004264.1-201ENST00000608354 794 ntBASIC19.05■□□□□ 0.64
CDH3P22223 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CDH3P22223 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CDH3P22223 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CDH3P22223 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
CDH3P22223 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.05■□□□□ 0.64
CDH3P22223 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
CDH3P22223 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDH3P22223 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
CDH3P22223 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.05■□□□□ 0.64
CDH3P22223 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.04■□□□□ 0.64
CDH3P22223 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH3P22223 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.04■□□□□ 0.64
CDH3P22223 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH3P22223 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CDH3P22223 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH3P22223 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CDH3P22223 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH3P22223 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH3P22223 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH3P22223 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CDH3P22223 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.04■□□□□ 0.64
CDH3P22223 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.04■□□□□ 0.64
CDH3P22223 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.04■□□□□ 0.64
CDH3P22223 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH3P22223 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms