Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
RNF40O75150 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF40O75150 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF40O75150 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.99■□□□□ 0.95
RNF40O75150 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.99■□□□□ 0.95
RNF40O75150 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.99■□□□□ 0.95
RNF40O75150 RN7SL471P-201ENST00000580476 299 ntBASIC20.99■□□□□ 0.95
RNF40O75150 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.99■□□□□ 0.95
RNF40O75150 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.99■□□□□ 0.95
RNF40O75150 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RNF40O75150 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.99■□□□□ 0.95
RNF40O75150 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF40O75150 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RNF40O75150 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.99■□□□□ 0.95
RNF40O75150 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
RNF40O75150 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.98■□□□□ 0.95
RNF40O75150 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.98■□□□□ 0.95
RNF40O75150 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
RNF40O75150 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.98■□□□□ 0.95
RNF40O75150 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RNF40O75150 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF40O75150 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF40O75150 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF40O75150 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RNF40O75150 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.98■□□□□ 0.95
RNF40O75150 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.98■□□□□ 0.95
RNF40O75150 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.98■□□□□ 0.95
RNF40O75150 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RNF40O75150 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF40O75150 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF40O75150 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.98■□□□□ 0.95
RNF40O75150 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.98■□□□□ 0.95
RNF40O75150 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
RNF40O75150 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.98■□□□□ 0.95
RNF40O75150 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF40O75150 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF40O75150 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.98■□□□□ 0.95
RNF40O75150 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF40O75150 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF40O75150 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
RNF40O75150 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
RNF40O75150 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.97■□□□□ 0.95
RNF40O75150 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.97■□□□□ 0.95
RNF40O75150 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
RNF40O75150 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF40O75150 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
RNF40O75150 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.97■□□□□ 0.95
RNF40O75150 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.97■□□□□ 0.95
RNF40O75150 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.97■□□□□ 0.95
RNF40O75150 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.97■□□□□ 0.95
RNF40O75150 AC069544.1-201ENST00000609399 999 ntBASIC20.97■□□□□ 0.95
RNF40O75150 AC105020.6-201ENST00000621523 1217 ntBASIC20.97■□□□□ 0.95
RNF40O75150 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF40O75150 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RNF40O75150 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF40O75150 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF40O75150 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF40O75150 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF40O75150 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.97■□□□□ 0.95
RNF40O75150 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.97■□□□□ 0.95
RNF40O75150 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.97■□□□□ 0.95
RNF40O75150 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF40O75150 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF40O75150 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.97■□□□□ 0.95
RNF40O75150 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.97■□□□□ 0.95
RNF40O75150 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.97■□□□□ 0.95
RNF40O75150 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
RNF40O75150 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.97■□□□□ 0.95
RNF40O75150 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF40O75150 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF40O75150 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.96■□□□□ 0.95
RNF40O75150 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.96■□□□□ 0.95
RNF40O75150 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF40O75150 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF40O75150 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF40O75150 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RNF40O75150 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.96■□□□□ 0.95
RNF40O75150 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF40O75150 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF40O75150 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.96■□□□□ 0.95
RNF40O75150 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF40O75150 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF40O75150 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RNF40O75150 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.96■□□□□ 0.95
RNF40O75150 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.96■□□□□ 0.95
RNF40O75150 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF40O75150 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RNF40O75150 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.96■□□□□ 0.95
RNF40O75150 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.96■□□□□ 0.95
RNF40O75150 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
RNF40O75150 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.95■□□□□ 0.94
RNF40O75150 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
RNF40O75150 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.95■□□□□ 0.94
RNF40O75150 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms