Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AL121906.2-201ENST00000621597 723 ntBASIC18.15■□□□□ 0.5
HMGN4O00479 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGN4O00479 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGN4O00479 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGN4O00479 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 LINC01465-201ENST00000408887 1940 ntBASIC18.15■□□□□ 0.5
HMGN4O00479 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HMGN4O00479 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 ZNF815P-204ENST00000434898 1737 ntBASIC18.15■□□□□ 0.5
HMGN4O00479 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
HMGN4O00479 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGN4O00479 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.14■□□□□ 0.49
HMGN4O00479 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.14■□□□□ 0.49
HMGN4O00479 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGN4O00479 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
HMGN4O00479 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGN4O00479 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
HMGN4O00479 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGN4O00479 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
HMGN4O00479 AC004408.2-201ENST00000623613 2777 ntBASIC18.13■□□□□ 0.49
HMGN4O00479 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 AP006587.1-201ENST00000534129 1502 ntBASIC18.13■□□□□ 0.49
HMGN4O00479 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGN4O00479 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
HMGN4O00479 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
HMGN4O00479 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
HMGN4O00479 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
HMGN4O00479 AC069152.1-201ENST00000438030 544 ntBASIC18.13■□□□□ 0.49
HMGN4O00479 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGN4O00479 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.13■□□□□ 0.49
HMGN4O00479 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.13■□□□□ 0.49
HMGN4O00479 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGN4O00479 AC120498.8-201ENST00000614275 531 ntBASIC18.13■□□□□ 0.49
HMGN4O00479 AC133041.1-202ENST00000642053 222 ntBASIC18.13■□□□□ 0.49
HMGN4O00479 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGN4O00479 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGN4O00479 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGN4O00479 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
HMGN4O00479 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGN4O00479 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.12■□□□□ 0.49
HMGN4O00479 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGN4O00479 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.12■□□□□ 0.49
HMGN4O00479 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
HMGN4O00479 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGN4O00479 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGN4O00479 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGN4O00479 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGN4O00479 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.12■□□□□ 0.49
HMGN4O00479 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGN4O00479 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.12■□□□□ 0.49
HMGN4O00479 AC104771.1-201ENST00000603335 964 ntBASIC18.12■□□□□ 0.49
HMGN4O00479 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGN4O00479 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HMGN4O00479 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGN4O00479 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
HMGN4O00479 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HMGN4O00479 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGN4O00479 TEX21P-204ENST00000641479 1693 ntBASIC18.12■□□□□ 0.49
HMGN4O00479 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGN4O00479 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HMGN4O00479 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGN4O00479 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.11■□□□□ 0.49
HMGN4O00479 YBX1P10-201ENST00000444752 975 ntBASIC18.11■□□□□ 0.49
HMGN4O00479 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.11■□□□□ 0.49
HMGN4O00479 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.11■□□□□ 0.49
HMGN4O00479 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGN4O00479 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.11■□□□□ 0.49
HMGN4O00479 AC142086.2-201ENST00000569753 217 ntBASIC18.11■□□□□ 0.49
HMGN4O00479 SOX15-203ENST00000570788 1093 ntBASIC18.11■□□□□ 0.49
HMGN4O00479 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGN4O00479 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.11■□□□□ 0.49
HMGN4O00479 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGN4O00479 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms