Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC33.02■■■□□ 2.88
SMC4Q9NTJ3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
SMC4Q9NTJ3 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
SMC4Q9NTJ3 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
SMC4Q9NTJ3 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC33■■■□□ 2.87
SMC4Q9NTJ3 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC33■■■□□ 2.87
SMC4Q9NTJ3 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC33■■■□□ 2.87
SMC4Q9NTJ3 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC33■■■□□ 2.87
SMC4Q9NTJ3 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC32.99■■■□□ 2.87
SMC4Q9NTJ3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC32.99■■■□□ 2.87
SMC4Q9NTJ3 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC32.99■■■□□ 2.87
SMC4Q9NTJ3 AC100797.4-201ENST00000631653 1827 ntBASIC32.99■■■□□ 2.87
SMC4Q9NTJ3 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
SMC4Q9NTJ3 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
SMC4Q9NTJ3 DRD5P2-201ENST00000421395 2012 ntBASIC32.98■■■□□ 2.87
SMC4Q9NTJ3 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
SMC4Q9NTJ3 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
SMC4Q9NTJ3 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
SMC4Q9NTJ3 HGH1-207ENST00000628266 258 ntTSL 5 BASIC32.97■■■□□ 2.87
SMC4Q9NTJ3 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC32.97■■■□□ 2.87
SMC4Q9NTJ3 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC32.96■■■□□ 2.87
SMC4Q9NTJ3 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC32.96■■■□□ 2.87
SMC4Q9NTJ3 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC32.96■■■□□ 2.87
SMC4Q9NTJ3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC32.96■■■□□ 2.87
SMC4Q9NTJ3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC32.96■■■□□ 2.87
SMC4Q9NTJ3 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
SMC4Q9NTJ3 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
SMC4Q9NTJ3 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
SMC4Q9NTJ3 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC32.95■■■□□ 2.87
SMC4Q9NTJ3 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
SMC4Q9NTJ3 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC32.95■■■□□ 2.87
SMC4Q9NTJ3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC32.95■■■□□ 2.87
SMC4Q9NTJ3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC32.95■■■□□ 2.87
SMC4Q9NTJ3 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC32.95■■■□□ 2.86
SMC4Q9NTJ3 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC32.94■■■□□ 2.86
SMC4Q9NTJ3 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
SMC4Q9NTJ3 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
SMC4Q9NTJ3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC32.93■■■□□ 2.86
SMC4Q9NTJ3 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC32.92■■■□□ 2.86
SMC4Q9NTJ3 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
SMC4Q9NTJ3 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC32.92■■■□□ 2.86
SMC4Q9NTJ3 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC32.92■■■□□ 2.86
SMC4Q9NTJ3 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC32.92■■■□□ 2.86
SMC4Q9NTJ3 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC32.92■■■□□ 2.86
SMC4Q9NTJ3 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
SMC4Q9NTJ3 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC32.91■■■□□ 2.86
SMC4Q9NTJ3 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC32.91■■■□□ 2.86
SMC4Q9NTJ3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC32.91■■■□□ 2.86
SMC4Q9NTJ3 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
SMC4Q9NTJ3 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC32.9■■■□□ 2.86
SMC4Q9NTJ3 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC32.9■■■□□ 2.86
SMC4Q9NTJ3 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
SMC4Q9NTJ3 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
SMC4Q9NTJ3 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC32.88■■■□□ 2.85
SMC4Q9NTJ3 MEST-211ENST00000437945 1455 ntTSL 5 BASIC32.88■■■□□ 2.85
SMC4Q9NTJ3 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC32.87■■■□□ 2.85
SMC4Q9NTJ3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
SMC4Q9NTJ3 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC32.86■■■□□ 2.85
SMC4Q9NTJ3 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC32.86■■■□□ 2.85
SMC4Q9NTJ3 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC32.86■■■□□ 2.85
SMC4Q9NTJ3 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
SMC4Q9NTJ3 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
SMC4Q9NTJ3 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC32.86■■■□□ 2.85
SMC4Q9NTJ3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
SMC4Q9NTJ3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC32.85■■■□□ 2.85
SMC4Q9NTJ3 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC32.85■■■□□ 2.85
SMC4Q9NTJ3 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
SMC4Q9NTJ3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
SMC4Q9NTJ3 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC32.83■■■□□ 2.85
SMC4Q9NTJ3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC32.83■■■□□ 2.85
SMC4Q9NTJ3 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC32.82■■■□□ 2.84
SMC4Q9NTJ3 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
SMC4Q9NTJ3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
SMC4Q9NTJ3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC32.81■■■□□ 2.84
SMC4Q9NTJ3 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
SMC4Q9NTJ3 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC32.8■■■□□ 2.84
SMC4Q9NTJ3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC32.8■■■□□ 2.84
SMC4Q9NTJ3 AC142086.6-201ENST00000621154 1765 ntBASIC32.79■■■□□ 2.84
SMC4Q9NTJ3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC32.78■■■□□ 2.84
SMC4Q9NTJ3 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
SMC4Q9NTJ3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC32.77■■■□□ 2.84
SMC4Q9NTJ3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC32.77■■■□□ 2.84
SMC4Q9NTJ3 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC32.77■■■□□ 2.84
SMC4Q9NTJ3 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC32.77■■■□□ 2.84
SMC4Q9NTJ3 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC32.76■■■□□ 2.84
SMC4Q9NTJ3 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
SMC4Q9NTJ3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
SMC4Q9NTJ3 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC32.75■■■□□ 2.83
SMC4Q9NTJ3 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
SMC4Q9NTJ3 ZNRF2P2-203ENST00000454624 420 ntBASIC32.74■■■□□ 2.83
SMC4Q9NTJ3 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
SMC4Q9NTJ3 ABHD17AP4-201ENST00000411545 909 ntBASIC32.72■■■□□ 2.83
SMC4Q9NTJ3 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC32.72■■■□□ 2.83
SMC4Q9NTJ3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC32.72■■■□□ 2.83
SMC4Q9NTJ3 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC32.72■■■□□ 2.83
SMC4Q9NTJ3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
SMC4Q9NTJ3 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
SMC4Q9NTJ3 PROC-203ENST00000409048 1586 ntTSL 5 BASIC32.7■■■□□ 2.83
SMC4Q9NTJ3 LINC01971-201ENST00000617888 1048 ntBASIC32.7■■■□□ 2.83
SMC4Q9NTJ3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms