Protein–RNA interactions for Protein: Q8NE71

ABCF1, ATP-binding cassette sub-family F member 1, humanhuman

Known RBP eCLIP

Length 845 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1Q8NE71 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.166e-7■□□□□ 8.6
ABCF1Q8NE71 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.941e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-230ENST00000576924 3314 ntTSL 1 (best)20.83■□□□□ 0.931e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC20.79■□□□□ 0.921e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-208ENST00000571378 2870 ntTSL 1 (best)19.01■□□□□ 0.631e-6■□□□□ 8.6
ABCF1Q8NE71 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.421e-6■□□□□ 8.6
ABCF1Q8NE71 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21e-6■□□□□ 8.6
ABCF1Q8NE71 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC16.32■□□□□ 0.21e-6■□□□□ 8.6
ABCF1Q8NE71 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.21e-6■□□□□ 8.6
ABCF1Q8NE71 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC16.27■□□□□ 0.21e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-224ENST00000575870 696 ntTSL 314.9□□□□□ -0.021e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-207ENST00000571372 462 ntTSL 313.16□□□□□ -0.31e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-203ENST00000570655 575 ntTSL 213.08□□□□□ -0.321e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-214ENST00000573451 441 ntTSL 311.8□□□□□ -0.521e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-215ENST00000573498 994 ntTSL 39.78□□□□□ -0.841e-6■□□□□ 8.6
ABCF1Q8NE71 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC39.1■■■■□ 3.853e-7■□□□□ 8.5
ABCF1Q8NE71 INPPL1-209ENST00000540973 375 ntTSL 337.94■■■■□ 3.665e-6■□□□□ 8.5
ABCF1Q8NE71 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC36.11■■■■□ 3.375e-6■□□□□ 8.5
ABCF1Q8NE71 INPPL1-211ENST00000541544 530 ntTSL 235.46■■■■□ 3.275e-6■□□□□ 8.5
ABCF1Q8NE71 VASP-211ENST00000592139 424 ntTSL 334.26■■■■□ 3.083e-7■□□□□ 8.5
ABCF1Q8NE71 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC32.98■■■□□ 2.875e-6■□□□□ 8.5
ABCF1Q8NE71 INPPL1-214ENST00000543234 275 ntTSL 232.43■■■□□ 2.785e-6■□□□□ 8.5
ABCF1Q8NE71 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC30.96■■■□□ 2.555e-6■□□□□ 8.5
ABCF1Q8NE71 VASP-202ENST00000586014 1725 ntTSL 527.79■■■□□ 2.043e-7■□□□□ 8.5
ABCF1Q8NE71 PIEZO1-206ENST00000474606 544 ntTSL 427.36■■□□□ 1.975e-6■□□□□ 8.5
ABCF1Q8NE71 PIEZO1-215ENST00000566414 564 ntTSL 426.67■■□□□ 1.865e-6■□□□□ 8.5
ABCF1Q8NE71 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.75e-6■□□□□ 8.5
ABCF1Q8NE71 WDR26-208ENST00000486652 2867 ntTSL 1 (best)23.64■■□□□ 1.385e-6■□□□□ 8.5
ABCF1Q8NE71 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.053e-7■□□□□ 8.5
ABCF1Q8NE71 VASP-207ENST00000588482 804 ntTSL 517.34■□□□□ 0.373e-7■□□□□ 8.5
ABCF1Q8NE71 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.075e-6■□□□□ 8.5
ABCF1Q8NE71 WDR26-202ENST00000443112 1306 ntTSL 1 (best)10.58□□□□□ -0.725e-6■□□□□ 8.5
ABCF1Q8NE71 WDR26-203ENST00000445239 784 ntTSL 58.74□□□□□ -1.015e-6■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-233ENST00000475721 1271 ntTSL 230.06■■■□□ 2.41e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-230ENST00000460829 1804 ntTSL 227.32■■□□□ 1.961e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC20.23■□□□□ 0.831e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC19.71■□□□□ 0.751e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC19.44■□□□□ 0.71e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.71e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC19.33■□□□□ 0.681e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC19.05■□□□□ 0.641e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.471e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC17.81■□□□□ 0.441e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-222ENST00000442406 5129 ntTSL 1 (best)17.75■□□□□ 0.431e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC17.27■□□□□ 0.361e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC16.99■□□□□ 0.311e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC16.9■□□□□ 0.31e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC16.23■□□□□ 0.191e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-221ENST00000441154 4311 ntTSL 5 BASIC14.6□□□□□ -0.071e-9■□□□□ 8.5
ABCF1Q8NE71 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.781e-10■□□□□ 8.4
ABCF1Q8NE71 TAF15-206ENST00000603967 656 ntTSL 325.88■■□□□ 1.731e-10■□□□□ 8.4
ABCF1Q8NE71 TAF15-210ENST00000604694 891 ntTSL 525.88■■□□□ 1.731e-10■□□□□ 8.4
ABCF1Q8NE71 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.511e-10■□□□□ 8.4
ABCF1Q8NE71 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.081e-10■□□□□ 8.4
ABCF1Q8NE71 EGFL7-206ENST00000492002 654 ntTSL 535.55■■■■□ 3.285e-6■□□□□ 8.4
ABCF1Q8NE71 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.415e-6■□□□□ 8.4
ABCF1Q8NE71 FBL-210ENST00000599159 1400 ntTSL 1 (best)33.4■■■□□ 2.943e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-203ENST00000594309 603 ntTSL 232.95■■■□□ 2.873e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-211ENST00000601274 877 ntTSL 532.95■■■□□ 2.873e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-209ENST00000599134 500 ntTSL 531.55■■■□□ 2.643e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.353e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-208ENST00000598417 581 ntTSL 528.43■■■□□ 2.143e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-207ENST00000597634 726 ntTSL 523.06■■□□□ 1.283e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-204ENST00000594443 805 ntTSL 319.83■□□□□ 0.773e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-206ENST00000597224 732 ntTSL 312.49□□□□□ -0.413e-14■□□□□ 8.3
ABCF1Q8NE71 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC22.49■■□□□ 1.193e-6■□□□□ 8.2
ABCF1Q8NE71 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.133e-6■□□□□ 8.2
ABCF1Q8NE71 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.693e-6■□□□□ 8.2
ABCF1Q8NE71 KPNB1-201ENST00000290158 6139 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.423e-6■□□□□ 8.2
ABCF1Q8NE71 KPNB1-213ENST00000583013 742 ntTSL 312.05□□□□□ -0.483e-6■□□□□ 8.2
ABCF1Q8NE71 KPNB1-211ENST00000582097 2347 ntTSL 211.78□□□□□ -0.523e-6■□□□□ 8.2
ABCF1Q8NE71 KPNB1-202ENST00000535458 3163 ntTSL 2 BASIC11.01□□□□□ -0.653e-6■□□□□ 8.2
ABCF1Q8NE71 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC8.99□□□□□ -0.973e-6■□□□□ 8.2
ABCF1Q8NE71 NCL-202ENST00000356936 890 ntTSL 325.73■■□□□ 1.712e-60■□□□□ 8.1
ABCF1Q8NE71 NCL-208ENST00000466274 671 ntTSL 29.33□□□□□ -0.922e-60■□□□□ 8.1
ABCF1Q8NE71 SNORD20-201ENST00000384550 80 ntBASIC1.05□□□□□ -2.242e-60■□□□□ 8.1
ABCF1Q8NE71 SCARNA2-201ENST00000458748 420 ntBASIC26.28■■□□□ 1.81e-323■□□□□ 8.1
ABCF1Q8NE71 AL356488.2-201ENST00000602755 427 ntBASIC26.01■■□□□ 1.751e-323■□□□□ 8.1
ABCF1Q8NE71 EIF4A2-208ENST00000445596 600 ntTSL 220.01■□□□□ 0.798e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-215ENST00000467585 570 ntTSL 219.08■□□□□ 0.648e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-227ENST00000498746 579 ntTSL 217.3■□□□□ 0.368e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-201ENST00000323963 1919 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.218e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-207ENST00000443963 1729 ntTSL 1 (best)9.93□□□□□ -0.828e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-218ENST00000475653 909 ntTSL 29.87□□□□□ -0.838e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-204ENST00000429589 1005 ntTSL 59.63□□□□□ -0.878e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-210ENST00000465032 578 ntTSL 29.63□□□□□ -0.878e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-212ENST00000465267 1054 ntTSL 29.63□□□□□ -0.878e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-224ENST00000495049 576 ntTSL 29.63□□□□□ -0.878e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-211ENST00000465222 676 ntTSL 29.52□□□□□ -0.898e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-203ENST00000426808 1751 ntTSL 1 (best)9.42□□□□□ -0.98e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-221ENST00000491473 579 ntTSL 28.71□□□□□ -1.028e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC8.67□□□□□ -1.028e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-202ENST00000425053 1977 ntTSL 57.44□□□□□ -1.228e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-219ENST00000485101 5327 ntTSL 55.23□□□□□ -1.578e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-220ENST00000486805 590 ntTSL 24.95□□□□□ -1.628e-20■□□□□ 8
ABCF1Q8NE71 SNORD2-201ENST00000459163 69 ntBASIC-0.08□□□□□ -2.428e-20■□□□□ 8
ABCF1Q8NE71 LTBP4-227ENST00000600026 723 ntTSL 331.92■■■□□ 2.79e-7■□□□□ 8
ABCF1Q8NE71 LTBP4-224ENST00000599016 726 ntTSL 331.33■■■□□ 2.619e-7■□□□□ 8
ABCF1Q8NE71 LMNA-225ENST00000515824 393 ntTSL 228.83■■■□□ 2.215e-9■□□□□ 8
ABCF1Q8NE71 LMNA-223ENST00000515459 757 ntTSL 524.39■■□□□ 1.495e-9■□□□□ 8
Retrieved 100 of 811 protein–RNA pairs in 57.2 ms