RNA–Protein interactions for RNA: ENST00000466274.1

NCL-208, Transcript of nucleolin, humanhuman

TSL 2

Gene NCL, Length 671 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-208ENST00000466274 AEBP2Q6ZN18 517 aaPredicted RBP26.62■■□□□ 1.85
NCL-208ENST00000466274 CHIC1Q5VXU3 224 aa25.34■■□□□ 1.65
NCL-208ENST00000466274 SENP3Q9H4L4 574 aaPredicted RBP22.62■■□□□ 1.21
NCL-208ENST00000466274 PHF23Q9BUL5 403 aaPredicted RBP22.4■■□□□ 1.18
NCL-208ENST00000466274 FOXD1Q16676 465 aa21.13■□□□□ 0.97
NCL-208ENST00000466274 PLPPR3Q6T4P5 718 aa20.28■□□□□ 0.84
NCL-208ENST00000466274 PPP6R1Q9UPN7 881 aa19.88■□□□□ 0.77
NCL-208ENST00000466274 ADRA2BP18089 450 aa19.82■□□□□ 0.76
NCL-208ENST00000466274 PIAS4Q8N2W9 510 aaPredicted RBP19.75■□□□□ 0.75
NCL-208ENST00000466274 MSH5O43196 834 aa19.65■□□□□ 0.74
NCL-208ENST00000466274 POTEDQ86YR6 584 aa19.05■□□□□ 0.64
NCL-208ENST00000466274 MAPK8IP2Q13387 824 aaPredicted RBP18.2■□□□□ 0.5
NCL-208ENST00000466274 SCAF1Q9H7N4 1312 aaKnown RBP18.05■□□□□ 0.48
NCL-208ENST00000466274 DMRT2Q9Y5R5 561 aa17.97■□□□□ 0.47
NCL-208ENST00000466274 PPP4R3CPQ6ZMV5 832 aa17.83■□□□□ 0.44
NCL-208ENST00000466274 CNKSR2Q8WXI2 1034 aa17.44■□□□□ 0.38
NCL-208ENST00000466274 HOXD11P31277 338 aaPredicted RBP17.34■□□□□ 0.37
NCL-208ENST00000466274 DCAF8L1A6NGE4 600 aa17.28■□□□□ 0.36
NCL-208ENST00000466274 RNF216Q9NWF9 866 aaPredicted RBP17.24■□□□□ 0.35
NCL-208ENST00000466274 NCBP3Q53F19 620 aaKnown RBP17.14■□□□□ 0.33
NCL-208ENST00000466274 NPM3O75607 178 aaKnown RBP16.93■□□□□ 0.3
NCL-208ENST00000466274 CACNB1Q02641 598 aaPredicted RBP16.86■□□□□ 0.29
NCL-208ENST00000466274 RNF39Q9H2S5 420 aa16.82■□□□□ 0.28
NCL-208ENST00000466274 KCNA4P22459 653 aa16.74■□□□□ 0.27
NCL-208ENST00000466274 DNAJC5BQ9UF47 199 aa16.66■□□□□ 0.26
NCL-208ENST00000466274 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.56■□□□□ 0.242e-14■■■□□ 16.3
NCL-208ENST00000466274 C1QBPQ07021 282 aaKnown RBP16.55■□□□□ 0.24
NCL-208ENST00000466274 U3KPZ7 1027 aaPredicted RBP16.22■□□□□ 0.19
NCL-208ENST00000466274 SLC4A2P04920 1241 aa16.16■□□□□ 0.18
NCL-208ENST00000466274 SPINK5Q9NQ38 1064 aaPredicted RBP15.99■□□□□ 0.15
NCL-208ENST00000466274 CAPN15O75808 1086 aa15.93■□□□□ 0.14
NCL-208ENST00000466274 DSG3P32926 999 aa15.8■□□□□ 0.12
NCL-208ENST00000466274 SLC4A1APQ9BWU0 796 aaKnown RBP15.8■□□□□ 0.12
NCL-208ENST00000466274 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.73■□□□□ 0.11
NCL-208ENST00000466274 HNRNPUL2Q1KMD3 747 aaKnown RBP15.73■□□□□ 0.11
NCL-208ENST00000466274 TRHP20396 242 aaPredicted RBP15.72■□□□□ 0.11
NCL-208ENST00000466274 APLP2Q06481 763 aa15.69■□□□□ 0.1
NCL-208ENST00000466274 SAMD1Q6SPF0 538 aaPredicted RBP15.67■□□□□ 0.1
NCL-208ENST00000466274 MYCNP04198 464 aaPredicted RBP15.62■□□□□ 0.09
NCL-208ENST00000466274 ZNF219Q9P2Y4 722 aaPredicted RBP15.62■□□□□ 0.09
NCL-208ENST00000466274 ABCB7O75027 752 aa15.6■□□□□ 0.09
NCL-208ENST00000466274 FOXD4L1Q9NU39 408 aa15.52■□□□□ 0.08
NCL-208ENST00000466274 ZBTB22O15209 634 aa15.4■□□□□ 0.06
NCL-208ENST00000466274 ATF5Q9Y2D1 282 aaPredicted RBP15.34■□□□□ 0.05
NCL-208ENST00000466274 POLA2Q14181 598 aa15.32■□□□□ 0.04
NCL-208ENST00000466274 ATXN8OSP0DMR3 200 aa15.01□□□□□ -0.01
NCL-208ENST00000466274 RBM42Q9BTD8 480 aaKnown RBP15.01□□□□□ -0.01
NCL-208ENST00000466274 POTEHQ6S545 545 aa14.94□□□□□ -0.02
NCL-208ENST00000466274 NISCHQ9Y2I1 1504 aa14.93□□□□□ -0.02
NCL-208ENST00000466274 ZBTB12Q9Y330 459 aaPredicted RBP14.93□□□□□ -0.02
NCL-208ENST00000466274 OSCARQ8IYS5 282 aa14.81□□□□□ -0.04
NCL-208ENST00000466274 CSRNP3Q8WYN3 585 aa14.78□□□□□ -0.04
NCL-208ENST00000466274 AKT1S1Q96B36 256 aa14.72□□□□□ -0.05
NCL-208ENST00000466274 CHRDL2Q6WN34 429 aa14.69□□□□□ -0.06
NCL-208ENST00000466274 EHMT2Q96KQ7 1210 aa14.68□□□□□ -0.06
NCL-208ENST00000466274 FBLN2P98095 1184 aa14.65□□□□□ -0.06
NCL-208ENST00000466274 REM2Q8IYK8 340 aaPredicted RBP14.62□□□□□ -0.07
NCL-208ENST00000466274 MKRN4PQ13434 485 aaPredicted RBP14.61□□□□□ -0.07
NCL-208ENST00000466274 SPDYE2BA6NHP3 402 aa14.51□□□□□ -0.09
NCL-208ENST00000466274 SPDYE6P0CI01 402 aa14.51□□□□□ -0.09
NCL-208ENST00000466274 SPDYE2Q495Y8 402 aa14.51□□□□□ -0.09
NCL-208ENST00000466274 PITPNM1O00562 1244 aa14.46□□□□□ -0.09
NCL-208ENST00000466274 PIP4P2Q8N4L2 257 aa14.39□□□□□ -0.11
NCL-208ENST00000466274 ZNF692Q9BU19 519 aaPredicted RBP14.39□□□□□ -0.11
NCL-208ENST00000466274 SSUH2Q9Y2M2 353 aa14.34□□□□□ -0.11
NCL-208ENST00000466274 FXR2P51116 673 aaKnown RBP eCLIP14.29□□□□□ -0.125e-11■■□□□ 14.2
NCL-208ENST00000466274 CLEC11AQ9Y240 323 aa14.26□□□□□ -0.13
NCL-208ENST00000466274 ABCC9O60706 1549 aa14.25□□□□□ -0.13
NCL-208ENST00000466274 SPDYE1Q8NFV5 336 aaPredicted RBP14.23□□□□□ -0.13
NCL-208ENST00000466274 PABPN1Q86U42 306 aaKnown RBP eCLIP14.2□□□□□ -0.14
NCL-208ENST00000466274 HAX1O00165 279 aa14.11□□□□□ -0.15
NCL-208ENST00000466274 PRKAR2AP13861 404 aaKnown RBP14.09□□□□□ -0.15
NCL-208ENST00000466274 SP7Q8TDD2 431 aaPredicted RBP14.05□□□□□ -0.16
NCL-208ENST00000466274 PRR29P0C7W0 189 aa14.02□□□□□ -0.17
NCL-208ENST00000466274 CHADLQ6NUI6 762 aa13.99□□□□□ -0.17
NCL-208ENST00000466274 EVX2Q03828 476 aa13.98□□□□□ -0.17
NCL-208ENST00000466274 SPDYE4A6NLX3 237 aa13.96□□□□□ -0.17
NCL-208ENST00000466274 C19orf67A6NJJ6 358 aa13.84□□□□□ -0.19
NCL-208ENST00000466274 STAG3Q9UJ98 1225 aa13.77□□□□□ -0.21
NCL-208ENST00000466274 FARP1Q9Y4F1 1045 aaPredicted RBP13.76□□□□□ -0.21
NCL-208ENST00000466274 CREBZFQ9NS37 354 aa13.71□□□□□ -0.21
NCL-208ENST00000466274 CD44P16070 742 aaKnown RBP13.64□□□□□ -0.23
NCL-208ENST00000466274 GABBR2O75899 941 aa13.63□□□□□ -0.23
NCL-208ENST00000466274 PROM2Q8N271 834 aa13.61□□□□□ -0.23
NCL-208ENST00000466274 CCDC180Q9P1Z9 1646 aa13.56□□□□□ -0.24
NCL-208ENST00000466274 MNX1P50219 401 aaPredicted RBP13.48□□□□□ -0.25
NCL-208ENST00000466274 ZRANB1Q9UGI0 708 aa13.48□□□□□ -0.25
NCL-208ENST00000466274 NPM1P06748 294 aaKnown RBP eCLIP13.42□□□□□ -0.26
NCL-208ENST00000466274 ZNF579Q8NAF0 562 aaKnown RBP13.41□□□□□ -0.26
NCL-208ENST00000466274 FKBP8Q14318 412 aa13.4□□□□□ -0.26
NCL-208ENST00000466274 PAK3O75914 559 aaPredicted RBP13.35□□□□□ -0.27
NCL-208ENST00000466274 POTEIP0CG38 1075 aa13.35□□□□□ -0.27
NCL-208ENST00000466274 CLCN6P51797 869 aa13.35□□□□□ -0.27
NCL-208ENST00000466274 MIER1Q8N108 512 aa13.33□□□□□ -0.28
NCL-208ENST00000466274 DNAJC5Q9H3Z4 198 aa13.33□□□□□ -0.28
NCL-208ENST00000466274 PHF12Q96QT6 1004 aa13.32□□□□□ -0.28
NCL-208ENST00000466274 RB1CC1Q8TDY2 1594 aa13.31□□□□□ -0.28
NCL-208ENST00000466274 GALR2O43603 387 aaPredicted RBP13.29□□□□□ -0.28
NCL-208ENST00000466274 DCBLD2Q96PD2 775 aa13.27□□□□□ -0.29
NCL-208ENST00000466274 TSPYL2Q9H2G4 693 aaPredicted RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms