Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.39■■□□□ 1.01
CCDC28AQ8IWP9 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.38■■□□□ 1.01
CCDC28AQ8IWP9 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC28AQ8IWP9 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.37■■□□□ 1.01
CCDC28AQ8IWP9 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC28AQ8IWP9 AC015813.7-201ENST00000623294 581 ntBASIC21.37■■□□□ 1.01
CCDC28AQ8IWP9 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC28AQ8IWP9 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC28AQ8IWP9 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC28AQ8IWP9 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC28AQ8IWP9 AC020928.2-201ENST00000588717 2197 ntBASIC21.36■■□□□ 1.01
CCDC28AQ8IWP9 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CCDC28AQ8IWP9 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CCDC28AQ8IWP9 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
CCDC28AQ8IWP9 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC28AQ8IWP9 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC28AQ8IWP9 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC28AQ8IWP9 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC28AQ8IWP9 CLDN5-201ENST00000403084 2357 ntBASIC21.34■■□□□ 1.01
CCDC28AQ8IWP9 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC28AQ8IWP9 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC28AQ8IWP9 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC28AQ8IWP9 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.32■■□□□ 1
CCDC28AQ8IWP9 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.32■■□□□ 1
CCDC28AQ8IWP9 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC28AQ8IWP9 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC28AQ8IWP9 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.32■■□□□ 1
CCDC28AQ8IWP9 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC28AQ8IWP9 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CCDC28AQ8IWP9 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC28AQ8IWP9 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC28AQ8IWP9 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC28AQ8IWP9 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC28AQ8IWP9 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.3■■□□□ 1
CCDC28AQ8IWP9 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC28AQ8IWP9 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC28AQ8IWP9 DRD5P2-201ENST00000421395 2012 ntBASIC21.3■■□□□ 1
CCDC28AQ8IWP9 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC28AQ8IWP9 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC28AQ8IWP9 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC28AQ8IWP9 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC28AQ8IWP9 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
CCDC28AQ8IWP9 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC28AQ8IWP9 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC28AQ8IWP9 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC28AQ8IWP9 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC28AQ8IWP9 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.28■■□□□ 1
CCDC28AQ8IWP9 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC28AQ8IWP9 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.28■■□□□ 1
CCDC28AQ8IWP9 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC28AQ8IWP9 AC012676.1-201ENST00000574705 1949 ntBASIC21.27■■□□□ 1
CCDC28AQ8IWP9 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC28AQ8IWP9 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC28AQ8IWP9 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC28AQ8IWP9 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.27■■□□□ 1
CCDC28AQ8IWP9 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC28AQ8IWP9 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC21.26■□□□□ 0.99
CCDC28AQ8IWP9 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC28AQ8IWP9 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC28AQ8IWP9 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CCDC28AQ8IWP9 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC28AQ8IWP9 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC28AQ8IWP9 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC28AQ8IWP9 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC28AQ8IWP9 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC28AQ8IWP9 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC28AQ8IWP9 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.25■□□□□ 0.99
CCDC28AQ8IWP9 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CCDC28AQ8IWP9 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC28AQ8IWP9 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC28AQ8IWP9 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC28AQ8IWP9 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC28AQ8IWP9 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC28AQ8IWP9 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC28AQ8IWP9 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28AQ8IWP9 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28AQ8IWP9 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28AQ8IWP9 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28AQ8IWP9 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CCDC28AQ8IWP9 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC28AQ8IWP9 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC28AQ8IWP9 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC28AQ8IWP9 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC28AQ8IWP9 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC28AQ8IWP9 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC28AQ8IWP9 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC28AQ8IWP9 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC28AQ8IWP9 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC28AQ8IWP9 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC28AQ8IWP9 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28AQ8IWP9 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28AQ8IWP9 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28AQ8IWP9 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28AQ8IWP9 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28AQ8IWP9 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28AQ8IWP9 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC28AQ8IWP9 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC28AQ8IWP9 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC28AQ8IWP9 AC079834.2-201ENST00000609776 1949 ntBASIC21.17■□□□□ 0.98
CCDC28AQ8IWP9 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms