Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SH3RF1Q7Z6J0 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC29.61■■■□□ 2.33
SH3RF1Q7Z6J0 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC29.61■■■□□ 2.33
SH3RF1Q7Z6J0 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.6■■■□□ 2.33
SH3RF1Q7Z6J0 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SH3RF1Q7Z6J0 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC29.6■■■□□ 2.33
SH3RF1Q7Z6J0 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC29.6■■■□□ 2.33
SH3RF1Q7Z6J0 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
SH3RF1Q7Z6J0 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
SH3RF1Q7Z6J0 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SH3RF1Q7Z6J0 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC29.58■■■□□ 2.33
SH3RF1Q7Z6J0 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC29.58■■■□□ 2.33
SH3RF1Q7Z6J0 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC29.57■■■□□ 2.32
SH3RF1Q7Z6J0 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SH3RF1Q7Z6J0 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.56■■■□□ 2.32
SH3RF1Q7Z6J0 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SH3RF1Q7Z6J0 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.56■■■□□ 2.32
SH3RF1Q7Z6J0 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC29.56■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L13-201ENST00000554103 1267 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L15-201ENST00000611059 1267 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L23-201ENST00000615195 1269 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L24-201ENST00000617576 1269 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L22-201ENST00000618238 1269 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L20-201ENST00000619712 1269 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L21-201ENST00000622058 1269 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L10-201ENST00000622460 1267 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L25-201ENST00000624915 1269 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC29.54■■■□□ 2.32
SH3RF1Q7Z6J0 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.54■■■□□ 2.32
SH3RF1Q7Z6J0 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.53■■■□□ 2.32
SH3RF1Q7Z6J0 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
SH3RF1Q7Z6J0 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC29.53■■■□□ 2.32
SH3RF1Q7Z6J0 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC29.52■■■□□ 2.32
SH3RF1Q7Z6J0 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
SH3RF1Q7Z6J0 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.51■■■□□ 2.31
SH3RF1Q7Z6J0 AC010864.1-201ENST00000609407 1511 ntBASIC29.5■■■□□ 2.31
SH3RF1Q7Z6J0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
SH3RF1Q7Z6J0 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC29.5■■■□□ 2.31
SH3RF1Q7Z6J0 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SH3RF1Q7Z6J0 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SH3RF1Q7Z6J0 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC29.49■■■□□ 2.31
SH3RF1Q7Z6J0 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC29.48■■■□□ 2.31
SH3RF1Q7Z6J0 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.48■■■□□ 2.31
SH3RF1Q7Z6J0 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SH3RF1Q7Z6J0 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
SH3RF1Q7Z6J0 RARRES2P2-201ENST00000394842 485 ntBASIC29.47■■■□□ 2.31
SH3RF1Q7Z6J0 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
SH3RF1Q7Z6J0 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
SH3RF1Q7Z6J0 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
SH3RF1Q7Z6J0 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC29.45■■■□□ 2.31
SH3RF1Q7Z6J0 SRP68-213ENST00000629930 165 ntTSL 5 BASIC29.45■■■□□ 2.31
SH3RF1Q7Z6J0 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC29.45■■■□□ 2.3
SH3RF1Q7Z6J0 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.44■■■□□ 2.3
SH3RF1Q7Z6J0 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC29.44■■■□□ 2.3
SH3RF1Q7Z6J0 AL139393.2-201ENST00000608721 2025 ntBASIC29.44■■■□□ 2.3
SH3RF1Q7Z6J0 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
SH3RF1Q7Z6J0 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC29.43■■■□□ 2.3
SH3RF1Q7Z6J0 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.43■■■□□ 2.3
SH3RF1Q7Z6J0 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SH3RF1Q7Z6J0 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
SH3RF1Q7Z6J0 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC29.42■■■□□ 2.3
SH3RF1Q7Z6J0 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
SH3RF1Q7Z6J0 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
SH3RF1Q7Z6J0 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.41■■■□□ 2.3
SH3RF1Q7Z6J0 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC29.41■■■□□ 2.3
SH3RF1Q7Z6J0 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.41■■■□□ 2.3
SH3RF1Q7Z6J0 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
SH3RF1Q7Z6J0 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
SH3RF1Q7Z6J0 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
SH3RF1Q7Z6J0 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
SH3RF1Q7Z6J0 ABHD17AP5-201ENST00000580133 923 ntBASIC29.39■■■□□ 2.3
SH3RF1Q7Z6J0 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SH3RF1Q7Z6J0 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SH3RF1Q7Z6J0 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SH3RF1Q7Z6J0 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SH3RF1Q7Z6J0 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
SH3RF1Q7Z6J0 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SH3RF1Q7Z6J0 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
SH3RF1Q7Z6J0 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
SH3RF1Q7Z6J0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC29.35■■■□□ 2.29
SH3RF1Q7Z6J0 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SH3RF1Q7Z6J0 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
SH3RF1Q7Z6J0 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC29.34■■■□□ 2.29
SH3RF1Q7Z6J0 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC29.34■■■□□ 2.29
SH3RF1Q7Z6J0 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
SH3RF1Q7Z6J0 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
SH3RF1Q7Z6J0 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC29.32■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 9.6 ms