Protein–RNA interactions for Protein: Q7RTT3

SSX9, Protein SSX9, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX9Q7RTT3 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SSX9Q7RTT3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SSX9Q7RTT3 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SSX9Q7RTT3 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
SSX9Q7RTT3 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSX9Q7RTT3 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSX9Q7RTT3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSX9Q7RTT3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SSX9Q7RTT3 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
SSX9Q7RTT3 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSX9Q7RTT3 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSX9Q7RTT3 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSX9Q7RTT3 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSX9Q7RTT3 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSX9Q7RTT3 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSX9Q7RTT3 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSX9Q7RTT3 AC127502.1-201ENST00000399971 1502 ntBASIC20.87■□□□□ 0.93
SSX9Q7RTT3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
SSX9Q7RTT3 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSX9Q7RTT3 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSX9Q7RTT3 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SSX9Q7RTT3 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSX9Q7RTT3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSX9Q7RTT3 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.85■□□□□ 0.93
SSX9Q7RTT3 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SSX9Q7RTT3 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX9Q7RTT3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SSX9Q7RTT3 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.83■□□□□ 0.93
SSX9Q7RTT3 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SSX9Q7RTT3 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSX9Q7RTT3 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSX9Q7RTT3 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.83■□□□□ 0.92
SSX9Q7RTT3 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SSX9Q7RTT3 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
SSX9Q7RTT3 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC20.82■□□□□ 0.92
SSX9Q7RTT3 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SSX9Q7RTT3 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SSX9Q7RTT3 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SSX9Q7RTT3 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.81■□□□□ 0.92
SSX9Q7RTT3 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SSX9Q7RTT3 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.8■□□□□ 0.92
SSX9Q7RTT3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC20.8■□□□□ 0.92
SSX9Q7RTT3 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.8■□□□□ 0.92
SSX9Q7RTT3 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
SSX9Q7RTT3 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SSX9Q7RTT3 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC20.79■□□□□ 0.92
SSX9Q7RTT3 AP004833.2-201ENST00000532228 1454 ntBASIC20.79■□□□□ 0.92
SSX9Q7RTT3 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SSX9Q7RTT3 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SSX9Q7RTT3 MIR762-201ENST00000390236 83 ntBASIC20.78■□□□□ 0.92
SSX9Q7RTT3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX9Q7RTT3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SSX9Q7RTT3 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SSX9Q7RTT3 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SSX9Q7RTT3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.77■□□□□ 0.92
SSX9Q7RTT3 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SSX9Q7RTT3 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC20.77■□□□□ 0.92
SSX9Q7RTT3 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.77■□□□□ 0.92
SSX9Q7RTT3 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.77■□□□□ 0.92
SSX9Q7RTT3 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SSX9Q7RTT3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
SSX9Q7RTT3 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC20.76■□□□□ 0.91
SSX9Q7RTT3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SSX9Q7RTT3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX9Q7RTT3 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SSX9Q7RTT3 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX9Q7RTT3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX9Q7RTT3 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX9Q7RTT3 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC20.75■□□□□ 0.91
SSX9Q7RTT3 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SSX9Q7RTT3 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC20.75■□□□□ 0.91
SSX9Q7RTT3 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
SSX9Q7RTT3 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SSX9Q7RTT3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC20.74■□□□□ 0.91
SSX9Q7RTT3 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SSX9Q7RTT3 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
SSX9Q7RTT3 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SSX9Q7RTT3 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SSX9Q7RTT3 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SSX9Q7RTT3 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SSX9Q7RTT3 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SSX9Q7RTT3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SSX9Q7RTT3 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SSX9Q7RTT3 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SSX9Q7RTT3 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SSX9Q7RTT3 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SSX9Q7RTT3 AL121749.1-202ENST00000609313 2153 ntBASIC20.71■□□□□ 0.91
SSX9Q7RTT3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
SSX9Q7RTT3 CHML-205ENST00000638160 705 ntTSL 3 BASIC20.71■□□□□ 0.91
SSX9Q7RTT3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SSX9Q7RTT3 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.7■□□□□ 0.9
SSX9Q7RTT3 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SSX9Q7RTT3 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SSX9Q7RTT3 AC100797.4-201ENST00000631653 1827 ntBASIC20.7■□□□□ 0.9
SSX9Q7RTT3 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC20.7■□□□□ 0.9
SSX9Q7RTT3 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.69■□□□□ 0.9
SSX9Q7RTT3 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.69■□□□□ 0.9
SSX9Q7RTT3 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
SSX9Q7RTT3 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SSX9Q7RTT3 BX255925.1-201ENST00000566954 1854 ntBASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms