Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC17.61■□□□□ 0.41
CKS1BP61024 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CKS1BP61024 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CKS1BP61024 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
CKS1BP61024 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CKS1BP61024 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CKS1BP61024 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC17.6■□□□□ 0.41
CKS1BP61024 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CKS1BP61024 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CKS1BP61024 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CKS1BP61024 RARA-203ENST00000394086 2008 ntTSL 2 BASIC17.59■□□□□ 0.41
CKS1BP61024 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CKS1BP61024 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CKS1BP61024 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CKS1BP61024 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CKS1BP61024 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CKS1BP61024 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CKS1BP61024 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CKS1BP61024 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CKS1BP61024 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CKS1BP61024 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CKS1BP61024 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CKS1BP61024 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CKS1BP61024 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC17.56■□□□□ 0.4
CKS1BP61024 AP002365.1-201ENST00000603448 772 ntBASIC17.56■□□□□ 0.4
CKS1BP61024 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC17.56■□□□□ 0.4
CKS1BP61024 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CKS1BP61024 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CKS1BP61024 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC17.56■□□□□ 0.4
CKS1BP61024 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CKS1BP61024 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC17.55■□□□□ 0.4
CKS1BP61024 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CKS1BP61024 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CKS1BP61024 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CKS1BP61024 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CKS1BP61024 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CKS1BP61024 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CKS1BP61024 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CKS1BP61024 AC142086.6-201ENST00000621154 1765 ntBASIC17.53■□□□□ 0.4
CKS1BP61024 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CKS1BP61024 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC17.53■□□□□ 0.4
CKS1BP61024 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CKS1BP61024 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CKS1BP61024 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CKS1BP61024 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
CKS1BP61024 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC17.52■□□□□ 0.4
CKS1BP61024 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
CKS1BP61024 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CKS1BP61024 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC17.52■□□□□ 0.4
CKS1BP61024 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC17.52■□□□□ 0.4
CKS1BP61024 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CKS1BP61024 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CKS1BP61024 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CKS1BP61024 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CKS1BP61024 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CKS1BP61024 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CKS1BP61024 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC17.51■□□□□ 0.39
CKS1BP61024 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC17.51■□□□□ 0.39
CKS1BP61024 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CKS1BP61024 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.5■□□□□ 0.39
CKS1BP61024 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CKS1BP61024 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CKS1BP61024 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
CKS1BP61024 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC17.5■□□□□ 0.39
CKS1BP61024 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC17.5■□□□□ 0.39
CKS1BP61024 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
CKS1BP61024 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CKS1BP61024 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CKS1BP61024 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CKS1BP61024 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CKS1BP61024 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CKS1BP61024 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CKS1BP61024 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CKS1BP61024 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CKS1BP61024 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CKS1BP61024 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CKS1BP61024 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CKS1BP61024 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CKS1BP61024 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CKS1BP61024 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC17.47■□□□□ 0.39
CKS1BP61024 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CKS1BP61024 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CKS1BP61024 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC17.47■□□□□ 0.39
CKS1BP61024 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CKS1BP61024 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CKS1BP61024 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC17.45■□□□□ 0.38
CKS1BP61024 WASH5P-204ENST00000632292 975 ntBASIC17.45■□□□□ 0.38
CKS1BP61024 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CKS1BP61024 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CKS1BP61024 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CKS1BP61024 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CKS1BP61024 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CKS1BP61024 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CKS1BP61024 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CKS1BP61024 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CKS1BP61024 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CKS1BP61024 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CKS1BP61024 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CKS1BP61024 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CKS1BP61024 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms