Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.1■■□□□ 1.13
SLC6A1P30531 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.09■■□□□ 1.13
SLC6A1P30531 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
SLC6A1P30531 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
SLC6A1P30531 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
SLC6A1P30531 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
SLC6A1P30531 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.08■■□□□ 1.13
SLC6A1P30531 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
SLC6A1P30531 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
SLC6A1P30531 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.12
SLC6A1P30531 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
SLC6A1P30531 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SLC6A1P30531 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
SLC6A1P30531 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SLC6A1P30531 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC6A1P30531 PROC-203ENST00000409048 1586 ntTSL 5 BASIC22.05■■□□□ 1.12
SLC6A1P30531 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC6A1P30531 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC22.05■■□□□ 1.12
SLC6A1P30531 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SLC6A1P30531 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC6A1P30531 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SLC6A1P30531 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.05■■□□□ 1.12
SLC6A1P30531 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.04■■□□□ 1.12
SLC6A1P30531 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.04■■□□□ 1.12
SLC6A1P30531 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SLC6A1P30531 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SLC6A1P30531 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC22.03■■□□□ 1.12
SLC6A1P30531 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
SLC6A1P30531 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
SLC6A1P30531 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
SLC6A1P30531 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
SLC6A1P30531 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SLC6A1P30531 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
SLC6A1P30531 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
SLC6A1P30531 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SLC6A1P30531 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
SLC6A1P30531 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC6A1P30531 AC091060.1-201ENST00000623524 1766 ntBASIC21.99■■□□□ 1.11
SLC6A1P30531 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.98■■□□□ 1.11
SLC6A1P30531 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SLC6A1P30531 AC020928.2-201ENST00000588717 2197 ntBASIC21.98■■□□□ 1.11
SLC6A1P30531 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.98■■□□□ 1.11
SLC6A1P30531 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SLC6A1P30531 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
SLC6A1P30531 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
SLC6A1P30531 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.97■■□□□ 1.11
SLC6A1P30531 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
SLC6A1P30531 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SLC6A1P30531 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.97■■□□□ 1.11
SLC6A1P30531 RARRES2P7-201ENST00000567349 469 ntBASIC21.97■■□□□ 1.11
SLC6A1P30531 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
SLC6A1P30531 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.97■■□□□ 1.11
SLC6A1P30531 LINC01003-201ENST00000564834 1764 ntBASIC21.97■■□□□ 1.11
SLC6A1P30531 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.96■■□□□ 1.11
SLC6A1P30531 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SLC6A1P30531 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SLC6A1P30531 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.96■■□□□ 1.11
SLC6A1P30531 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.95■■□□□ 1.1
SLC6A1P30531 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
SLC6A1P30531 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SLC6A1P30531 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SLC6A1P30531 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SLC6A1P30531 AC093323.1-202ENST00000635031 2045 ntBASIC21.94■■□□□ 1.1
SLC6A1P30531 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
SLC6A1P30531 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SLC6A1P30531 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SLC6A1P30531 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC6A1P30531 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC6A1P30531 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.92■■□□□ 1.1
SLC6A1P30531 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC6A1P30531 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
SLC6A1P30531 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC6A1P30531 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SLC6A1P30531 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SLC6A1P30531 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SLC6A1P30531 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.9■■□□□ 1.1
SLC6A1P30531 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.9■■□□□ 1.1
SLC6A1P30531 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC21.9■■□□□ 1.1
SLC6A1P30531 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC21.9■■□□□ 1.1
SLC6A1P30531 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.9■■□□□ 1.1
SLC6A1P30531 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.9■■□□□ 1.1
SLC6A1P30531 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SLC6A1P30531 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SLC6A1P30531 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.89■■□□□ 1.1
SLC6A1P30531 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SLC6A1P30531 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.89■■□□□ 1.09
SLC6A1P30531 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SLC6A1P30531 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A1P30531 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A1P30531 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A1P30531 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SLC6A1P30531 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A1P30531 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A1P30531 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.87■■□□□ 1.09
SLC6A1P30531 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SLC6A1P30531 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC6A1P30531 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC6A1P30531 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC6A1P30531 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SLC6A1P30531 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms