Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC26.52■■□□□ 1.84
COL4A2P08572 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
COL4A2P08572 AC008813.1-201ENST00000536597 885 ntBASIC26.51■■□□□ 1.83
COL4A2P08572 AC012354.3-201ENST00000623734 483 ntBASIC26.51■■□□□ 1.83
COL4A2P08572 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC26.51■■□□□ 1.83
COL4A2P08572 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
COL4A2P08572 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC26.51■■□□□ 1.83
COL4A2P08572 AC060814.1-201ENST00000554326 538 ntBASIC26.51■■□□□ 1.83
COL4A2P08572 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
COL4A2P08572 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
COL4A2P08572 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL4A2P08572 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL4A2P08572 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
COL4A2P08572 AC022413.1-201ENST00000624602 984 ntBASIC26.49■■□□□ 1.83
COL4A2P08572 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL4A2P08572 AC127502.1-201ENST00000399971 1502 ntBASIC26.49■■□□□ 1.83
COL4A2P08572 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL4A2P08572 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
COL4A2P08572 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC26.46■■□□□ 1.83
COL4A2P08572 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
COL4A2P08572 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL4A2P08572 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL4A2P08572 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
COL4A2P08572 CHST11-203ENST00000547956 936 ntTSL 2 BASIC26.45■■□□□ 1.82
COL4A2P08572 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
COL4A2P08572 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL4A2P08572 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL4A2P08572 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
COL4A2P08572 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL4A2P08572 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC26.44■■□□□ 1.82
COL4A2P08572 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL4A2P08572 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
COL4A2P08572 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC26.43■■□□□ 1.82
COL4A2P08572 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
COL4A2P08572 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
COL4A2P08572 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
COL4A2P08572 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL4A2P08572 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL4A2P08572 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL4A2P08572 HES4-202ENST00000428771 1040 ntTSL 2 BASIC26.42■■□□□ 1.82
COL4A2P08572 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
COL4A2P08572 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL4A2P08572 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC26.42■■□□□ 1.82
COL4A2P08572 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.41■■□□□ 1.82
COL4A2P08572 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
COL4A2P08572 PEX7-203ENST00000541292 945 ntTSL 5 BASIC26.4■■□□□ 1.82
COL4A2P08572 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.4■■□□□ 1.82
COL4A2P08572 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.39■■□□□ 1.82
COL4A2P08572 AC092296.2-201ENST00000589470 999 ntBASIC26.39■■□□□ 1.81
COL4A2P08572 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL4A2P08572 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC26.38■■□□□ 1.81
COL4A2P08572 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL4A2P08572 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL4A2P08572 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
COL4A2P08572 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
COL4A2P08572 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL4A2P08572 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
COL4A2P08572 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL4A2P08572 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL4A2P08572 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC26.35■■□□□ 1.81
COL4A2P08572 RPS2-210ENST00000530225 765 ntTSL 2 BASIC26.35■■□□□ 1.81
COL4A2P08572 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
COL4A2P08572 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL4A2P08572 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL4A2P08572 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.34■■□□□ 1.81
COL4A2P08572 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC26.34■■□□□ 1.81
COL4A2P08572 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL4A2P08572 GFER-205ENST00000569451 517 ntTSL 5 BASIC26.33■■□□□ 1.81
COL4A2P08572 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A2P08572 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A2P08572 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.32■■□□□ 1.8
COL4A2P08572 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC26.32■■□□□ 1.8
COL4A2P08572 AC110285.7-201ENST00000624417 1536 ntBASIC26.32■■□□□ 1.8
COL4A2P08572 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A2P08572 AC018358.1-201ENST00000631079 1402 ntBASIC26.31■■□□□ 1.8
COL4A2P08572 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A2P08572 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.31■■□□□ 1.8
COL4A2P08572 U85056.1-201ENST00000616429 682 ntBASIC26.31■■□□□ 1.8
COL4A2P08572 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A2P08572 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A2P08572 AL135925.1-201ENST00000605920 1701 ntBASIC26.31■■□□□ 1.8
COL4A2P08572 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A2P08572 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A2P08572 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC26.29■■□□□ 1.8
COL4A2P08572 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
COL4A2P08572 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
COL4A2P08572 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
COL4A2P08572 KRT18P60-201ENST00000312876 1297 ntBASIC26.28■■□□□ 1.8
COL4A2P08572 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC26.28■■□□□ 1.8
COL4A2P08572 MIR219A2-201ENST00000608502 1504 ntBASIC26.28■■□□□ 1.8
COL4A2P08572 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL4A2P08572 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL4A2P08572 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL4A2P08572 AL157400.5-201ENST00000507624 621 ntBASIC26.25■■□□□ 1.79
COL4A2P08572 AL033527.3-201ENST00000566366 1196 ntBASIC26.25■■□□□ 1.79
COL4A2P08572 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
COL4A2P08572 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.25■■□□□ 1.79
COL4A2P08572 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL4A2P08572 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL4A2P08572 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms