Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
UPK1AO00322 MIR3665-201ENST00000578708 105 ntBASIC24.36■■□□□ 1.49
UPK1AO00322 AP006261.1-201ENST00000584783 668 ntBASIC24.36■■□□□ 1.49
UPK1AO00322 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC24.36■■□□□ 1.49
UPK1AO00322 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
UPK1AO00322 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
UPK1AO00322 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
UPK1AO00322 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
UPK1AO00322 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC24.33■■□□□ 1.49
UPK1AO00322 NRG1-221ENST00000614767 762 ntTSL 5 BASIC24.33■■□□□ 1.49
UPK1AO00322 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
UPK1AO00322 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.32■■□□□ 1.48
UPK1AO00322 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UPK1AO00322 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UPK1AO00322 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
UPK1AO00322 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.31■■□□□ 1.48
UPK1AO00322 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
UPK1AO00322 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC24.3■■□□□ 1.48
UPK1AO00322 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
UPK1AO00322 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC24.3■■□□□ 1.48
UPK1AO00322 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
UPK1AO00322 AC127502.1-201ENST00000399971 1502 ntBASIC24.3■■□□□ 1.48
UPK1AO00322 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
UPK1AO00322 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
UPK1AO00322 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC24.28■■□□□ 1.48
UPK1AO00322 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.28■■□□□ 1.48
UPK1AO00322 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
UPK1AO00322 AL162393.1-201ENST00000437852 946 ntBASIC24.27■■□□□ 1.48
UPK1AO00322 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC24.27■■□□□ 1.48
UPK1AO00322 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.27■■□□□ 1.48
UPK1AO00322 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.26■■□□□ 1.47
UPK1AO00322 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
UPK1AO00322 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
UPK1AO00322 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
UPK1AO00322 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
UPK1AO00322 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.25■■□□□ 1.47
UPK1AO00322 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
UPK1AO00322 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
UPK1AO00322 AC108673.1-201ENST00000510422 1159 ntBASIC24.24■■□□□ 1.47
UPK1AO00322 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
UPK1AO00322 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
UPK1AO00322 MIR6090-201ENST00000622481 60 ntBASIC24.23■■□□□ 1.47
UPK1AO00322 AC087741.3-201ENST00000624270 1347 ntBASIC24.23■■□□□ 1.47
UPK1AO00322 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
UPK1AO00322 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
UPK1AO00322 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
UPK1AO00322 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
UPK1AO00322 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
UPK1AO00322 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
UPK1AO00322 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
UPK1AO00322 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
UPK1AO00322 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
UPK1AO00322 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
UPK1AO00322 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
UPK1AO00322 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
UPK1AO00322 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
UPK1AO00322 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
UPK1AO00322 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.18■■□□□ 1.46
UPK1AO00322 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
UPK1AO00322 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
UPK1AO00322 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
UPK1AO00322 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.17■■□□□ 1.46
UPK1AO00322 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
UPK1AO00322 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
UPK1AO00322 AP004833.2-201ENST00000532228 1454 ntBASIC24.16■■□□□ 1.46
UPK1AO00322 AC135731.1-201ENST00000569415 2548 ntBASIC24.16■■□□□ 1.46
UPK1AO00322 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
UPK1AO00322 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
UPK1AO00322 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
UPK1AO00322 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.15■■□□□ 1.46
UPK1AO00322 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.15■■□□□ 1.46
UPK1AO00322 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
UPK1AO00322 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
UPK1AO00322 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
UPK1AO00322 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC24.13■■□□□ 1.45
UPK1AO00322 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
UPK1AO00322 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
UPK1AO00322 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC24.12■■□□□ 1.45
UPK1AO00322 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
UPK1AO00322 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
UPK1AO00322 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
UPK1AO00322 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
UPK1AO00322 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
UPK1AO00322 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.11■■□□□ 1.45
UPK1AO00322 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
UPK1AO00322 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.11■■□□□ 1.45
UPK1AO00322 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
UPK1AO00322 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
UPK1AO00322 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.1■■□□□ 1.45
UPK1AO00322 AC044849.2-201ENST00000606596 710 ntBASIC24.1■■□□□ 1.45
UPK1AO00322 BX255925.1-201ENST00000566954 1854 ntBASIC24.1■■□□□ 1.45
UPK1AO00322 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.1■■□□□ 1.45
UPK1AO00322 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
UPK1AO00322 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.09■■□□□ 1.45
UPK1AO00322 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.09■■□□□ 1.45
UPK1AO00322 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
UPK1AO00322 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC24.08■■□□□ 1.44
UPK1AO00322 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24.08■■□□□ 1.44
UPK1AO00322 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
UPK1AO00322 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms