Protein–RNA interactions for Protein: A0A0B4J274

TRAV20, T-cell receptor alpha variable 20 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV20A0A0B4J274 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.54■■□□□ 1.04
TRAV20A0A0B4J274 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAV20A0A0B4J274 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAV20A0A0B4J274 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.53■■□□□ 1.04
TRAV20A0A0B4J274 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.53■■□□□ 1.04
TRAV20A0A0B4J274 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
TRAV20A0A0B4J274 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.52■■□□□ 1.04
TRAV20A0A0B4J274 AC010864.1-201ENST00000609407 1511 ntBASIC21.52■■□□□ 1.04
TRAV20A0A0B4J274 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRAV20A0A0B4J274 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
TRAV20A0A0B4J274 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
TRAV20A0A0B4J274 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV20A0A0B4J274 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV20A0A0B4J274 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.51■■□□□ 1.03
TRAV20A0A0B4J274 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV20A0A0B4J274 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV20A0A0B4J274 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV20A0A0B4J274 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV20A0A0B4J274 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV20A0A0B4J274 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV20A0A0B4J274 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.49■■□□□ 1.03
TRAV20A0A0B4J274 LINC00273-201ENST00000539813 1452 ntBASIC21.49■■□□□ 1.03
TRAV20A0A0B4J274 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV20A0A0B4J274 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV20A0A0B4J274 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV20A0A0B4J274 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRAV20A0A0B4J274 HSD17B1P1-201ENST00000590052 955 ntBASIC21.48■■□□□ 1.03
TRAV20A0A0B4J274 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
TRAV20A0A0B4J274 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.48■■□□□ 1.03
TRAV20A0A0B4J274 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TRAV20A0A0B4J274 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV20A0A0B4J274 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
TRAV20A0A0B4J274 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV20A0A0B4J274 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
TRAV20A0A0B4J274 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRAV20A0A0B4J274 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.46■■□□□ 1.03
TRAV20A0A0B4J274 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TRAV20A0A0B4J274 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV20A0A0B4J274 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV20A0A0B4J274 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV20A0A0B4J274 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV20A0A0B4J274 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.45■■□□□ 1.02
TRAV20A0A0B4J274 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRAV20A0A0B4J274 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.44■■□□□ 1.02
TRAV20A0A0B4J274 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.44■■□□□ 1.02
TRAV20A0A0B4J274 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRAV20A0A0B4J274 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRAV20A0A0B4J274 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TRAV20A0A0B4J274 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.43■■□□□ 1.02
TRAV20A0A0B4J274 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TRAV20A0A0B4J274 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.42■■□□□ 1.02
TRAV20A0A0B4J274 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV20A0A0B4J274 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
TRAV20A0A0B4J274 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.41■■□□□ 1.02
TRAV20A0A0B4J274 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV20A0A0B4J274 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV20A0A0B4J274 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.4■■□□□ 1.02
TRAV20A0A0B4J274 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV20A0A0B4J274 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV20A0A0B4J274 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV20A0A0B4J274 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV20A0A0B4J274 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV20A0A0B4J274 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV20A0A0B4J274 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.4■■□□□ 1.02
TRAV20A0A0B4J274 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
TRAV20A0A0B4J274 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.39■■□□□ 1.01
TRAV20A0A0B4J274 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRAV20A0A0B4J274 ABCB10P3-201ENST00000561950 2166 ntBASIC21.38■■□□□ 1.01
TRAV20A0A0B4J274 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRAV20A0A0B4J274 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.38■■□□□ 1.01
TRAV20A0A0B4J274 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRAV20A0A0B4J274 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.38■■□□□ 1.01
TRAV20A0A0B4J274 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
TRAV20A0A0B4J274 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.37■■□□□ 1.01
TRAV20A0A0B4J274 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV20A0A0B4J274 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV20A0A0B4J274 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV20A0A0B4J274 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV20A0A0B4J274 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV20A0A0B4J274 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV20A0A0B4J274 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV20A0A0B4J274 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV20A0A0B4J274 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV20A0A0B4J274 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRAV20A0A0B4J274 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
TRAV20A0A0B4J274 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.35■■□□□ 1.01
TRAV20A0A0B4J274 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.35■■□□□ 1.01
TRAV20A0A0B4J274 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRAV20A0A0B4J274 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRAV20A0A0B4J274 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
TRAV20A0A0B4J274 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRAV20A0A0B4J274 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
TRAV20A0A0B4J274 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.33■■□□□ 1.01
TRAV20A0A0B4J274 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
TRAV20A0A0B4J274 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
TRAV20A0A0B4J274 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
TRAV20A0A0B4J274 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAV20A0A0B4J274 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.31■■□□□ 1
TRAV20A0A0B4J274 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
TRAV20A0A0B4J274 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms