Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AC093414.1-201ENST00000434712 514 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 PRPF38AP2-201ENST00000438179 851 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 ARAFP2-201ENST00000440565 559 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AC093763.2-201ENST00000505334 1223 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 RFPL4AP5-201ENST00000514977 504 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AC020910.3-201ENST00000603701 874 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AC097505.1-201ENST00000610199 565 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AC073575.2-201ENST00000614212 627 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AC091905.4-201ENST00000623432 202 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AL133268.1-201ENST00000405676 1401 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 C4BPAP1-201ENST00000415474 1893 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 AL121950.1-201ENST00000624993 2077 ntBASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS29Q9UBQ0 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 RN7SKP95-201ENST00000362860 303 ntBASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 RNU1-83P-201ENST00000363426 164 ntBASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 CHEK2P3-201ENST00000416118 248 ntBASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 AC234781.3-201ENST00000452540 973 ntBASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 AL445433.1-201ENST00000457507 257 ntBASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 RPSAP50-201ENST00000481955 852 ntBASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 FKBP1BP1-201ENST00000553366 325 ntBASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 AC093249.4-201ENST00000564755 259 ntBASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 TMEM30CP-203ENST00000637814 1035 ntBASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS29Q9UBQ0 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
VPS29Q9UBQ0 AL672167.1-205ENST00000641112 3080 ntBASIC4.59□□□□□ -1.68
VPS29Q9UBQ0 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 TTC39DP-201ENST00000416781 1688 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 UBBP2-201ENST00000376781 231 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC092642.1-201ENST00000392417 425 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 RN7SKP213-201ENST00000410746 298 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC112498.1-201ENST00000444401 332 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC108751.2-201ENST00000469993 231 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 DUBR-205ENST00000495228 411 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC112184.1-201ENST00000505179 312 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 GAPDHP56-201ENST00000506031 988 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 BUD31P1-201ENST00000521828 359 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC022726.1-201ENST00000587475 207 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC074140.1-201ENST00000621617 208 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC112694.2-201ENST00000623697 768 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC011815.3-201ENST00000624194 473 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AC139713.2-215ENST00000641428 5037 ntBASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS29Q9UBQ0 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS29Q9UBQ0 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
VPS29Q9UBQ0 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS29Q9UBQ0 AC126323.6-202ENST00000568092 3511 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms