RNA–Protein interactions for RNA: ENST00000427299.6

LINC00458-202, long intergenic non-protein coding RNA 458, humanhuman

TSL 1 (best) BASIC

Gene LINC00458, Length 1,030 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-202ENST00000427299 AEBP2Q6ZN18 517 aaPredicted RBP33.13■■■□□ 2.89
LINC00458-202ENST00000427299 CHIC1Q5VXU3 224 aa31.54■■■□□ 2.64
LINC00458-202ENST00000427299 SENP3Q9H4L4 574 aaPredicted RBP28.22■■■□□ 2.11
LINC00458-202ENST00000427299 PHF23Q9BUL5 403 aaPredicted RBP27.86■■■□□ 2.05
LINC00458-202ENST00000427299 FOXD1Q16676 465 aa26.3■■□□□ 1.8
LINC00458-202ENST00000427299 PLPPR3Q6T4P5 718 aa25.22■■□□□ 1.63
LINC00458-202ENST00000427299 PPP6R1Q9UPN7 881 aa24.67■■□□□ 1.54
LINC00458-202ENST00000427299 MSH5O43196 834 aa24.61■■□□□ 1.53
LINC00458-202ENST00000427299 ADRA2BP18089 450 aa24.58■■□□□ 1.53
LINC00458-202ENST00000427299 PIAS4Q8N2W9 510 aaPredicted RBP24.58■■□□□ 1.53
LINC00458-202ENST00000427299 POTEDQ86YR6 584 aa24.43■■□□□ 1.5
LINC00458-202ENST00000427299 MAPK8IP2Q13387 824 aaPredicted RBP22.54■■□□□ 1.2
LINC00458-202ENST00000427299 SCAF1Q9H7N4 1312 aaKnown RBP22.45■■□□□ 1.18
LINC00458-202ENST00000427299 DMRT2Q9Y5R5 561 aa22.41■■□□□ 1.18
LINC00458-202ENST00000427299 PPP4R3CPQ6ZMV5 832 aa22.11■■□□□ 1.13
LINC00458-202ENST00000427299 CNKSR2Q8WXI2 1034 aa21.68■■□□□ 1.06
LINC00458-202ENST00000427299 HOXD11P31277 338 aaPredicted RBP21.63■■□□□ 1.05
LINC00458-202ENST00000427299 RNF216Q9NWF9 866 aaPredicted RBP21.47■■□□□ 1.03
LINC00458-202ENST00000427299 DCAF8L1A6NGE4 600 aa21.4■■□□□ 1.02
LINC00458-202ENST00000427299 CACNB1Q02641 598 aaPredicted RBP21.28■■□□□ 1
LINC00458-202ENST00000427299 NCBP3Q53F19 620 aaKnown RBP21.27■■□□□ 1
LINC00458-202ENST00000427299 RNF39Q9H2S5 420 aa21.01■□□□□ 0.95
LINC00458-202ENST00000427299 NPM3O75607 178 aaKnown RBP21■□□□□ 0.95
LINC00458-202ENST00000427299 DNAJC5BQ9UF47 199 aa20.88■□□□□ 0.93
LINC00458-202ENST00000427299 KCNA4P22459 653 aa20.68■□□□□ 0.9
LINC00458-202ENST00000427299 C1QBPQ07021 282 aaKnown RBP20.68■□□□□ 0.9
LINC00458-202ENST00000427299 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.55■□□□□ 0.88
LINC00458-202ENST00000427299 U3KPZ7 1027 aaPredicted RBP20.18■□□□□ 0.82
LINC00458-202ENST00000427299 SLC4A2P04920 1241 aa20.05■□□□□ 0.8
LINC00458-202ENST00000427299 SPINK5Q9NQ38 1064 aaPredicted RBP19.85■□□□□ 0.77
LINC00458-202ENST00000427299 CAPN15O75808 1086 aa19.77■□□□□ 0.76
LINC00458-202ENST00000427299 DSG3P32926 999 aa19.68■□□□□ 0.74
LINC00458-202ENST00000427299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.6■□□□□ 0.73
LINC00458-202ENST00000427299 HNRNPUL2Q1KMD3 747 aaKnown RBP19.6■□□□□ 0.73
LINC00458-202ENST00000427299 APLP2Q06481 763 aa19.57■□□□□ 0.72
LINC00458-202ENST00000427299 SLC4A1APQ9BWU0 796 aaKnown RBP19.52■□□□□ 0.72
LINC00458-202ENST00000427299 SAMD1Q6SPF0 538 aaPredicted RBP19.51■□□□□ 0.71
LINC00458-202ENST00000427299 TRHP20396 242 aaPredicted RBP19.47■□□□□ 0.71
LINC00458-202ENST00000427299 ZNF219Q9P2Y4 722 aaPredicted RBP19.47■□□□□ 0.71
LINC00458-202ENST00000427299 MYCNP04198 464 aaPredicted RBP19.41■□□□□ 0.7
LINC00458-202ENST00000427299 ABCB7O75027 752 aa19.33■□□□□ 0.68
LINC00458-202ENST00000427299 FOXD4L1Q9NU39 408 aa19.26■□□□□ 0.67
LINC00458-202ENST00000427299 POTEHQ6S545 545 aa19.09■□□□□ 0.65
LINC00458-202ENST00000427299 ZBTB22O15209 634 aa19.05■□□□□ 0.64
LINC00458-202ENST00000427299 POLA2Q14181 598 aa18.99■□□□□ 0.63
LINC00458-202ENST00000427299 ATF5Q9Y2D1 282 aaPredicted RBP18.98■□□□□ 0.63
LINC00458-202ENST00000427299 RBM42Q9BTD8 480 aaKnown RBP18.75■□□□□ 0.59
LINC00458-202ENST00000427299 ATXN8OSP0DMR3 200 aa18.68■□□□□ 0.58
LINC00458-202ENST00000427299 ZBTB12Q9Y330 459 aaPredicted RBP18.62■□□□□ 0.57
LINC00458-202ENST00000427299 OSCARQ8IYS5 282 aa18.4■□□□□ 0.54
LINC00458-202ENST00000427299 CHRDL2Q6WN34 429 aa18.38■□□□□ 0.53
LINC00458-202ENST00000427299 AKT1S1Q96B36 256 aa18.35■□□□□ 0.53
LINC00458-202ENST00000427299 CSRNP3Q8WYN3 585 aa18.22■□□□□ 0.51
LINC00458-202ENST00000427299 FBLN2P98095 1184 aa18.18■□□□□ 0.5
LINC00458-202ENST00000427299 REM2Q8IYK8 340 aaPredicted RBP18.18■□□□□ 0.5
LINC00458-202ENST00000427299 MKRN4PQ13434 485 aaPredicted RBP18.12■□□□□ 0.49
LINC00458-202ENST00000427299 SPDYE2BA6NHP3 402 aa18.06■□□□□ 0.48
LINC00458-202ENST00000427299 SPDYE6P0CI01 402 aa18.06■□□□□ 0.48
LINC00458-202ENST00000427299 SPDYE2Q495Y8 402 aa18.06■□□□□ 0.48
LINC00458-202ENST00000427299 PITPNM1O00562 1244 aa18■□□□□ 0.47
LINC00458-202ENST00000427299 EHMT2Q96KQ7 1210 aa18■□□□□ 0.47
LINC00458-202ENST00000427299 PIP4P2Q8N4L2 257 aa17.92■□□□□ 0.46
LINC00458-202ENST00000427299 SSUH2Q9Y2M2 353 aa17.86■□□□□ 0.45
LINC00458-202ENST00000427299 FXR2P51116 673 aaKnown RBP eCLIP17.83■□□□□ 0.44
LINC00458-202ENST00000427299 ZNF692Q9BU19 519 aaPredicted RBP17.83■□□□□ 0.44
LINC00458-202ENST00000427299 SP7Q8TDD2 431 aaPredicted RBP17.79■□□□□ 0.44
LINC00458-202ENST00000427299 SPDYE1Q8NFV5 336 aaPredicted RBP17.71■□□□□ 0.43
LINC00458-202ENST00000427299 HAX1O00165 279 aa17.64■□□□□ 0.41
LINC00458-202ENST00000427299 CLEC11AQ9Y240 323 aa17.64■□□□□ 0.41
LINC00458-202ENST00000427299 PABPN1Q86U42 306 aaKnown RBP eCLIP17.58■□□□□ 0.4
LINC00458-202ENST00000427299 PRKAR2AP13861 404 aaKnown RBP17.5■□□□□ 0.39
LINC00458-202ENST00000427299 EVX2Q03828 476 aa17.45■□□□□ 0.38
LINC00458-202ENST00000427299 PRR29P0C7W0 189 aa17.38■□□□□ 0.37
LINC00458-202ENST00000427299 CHADLQ6NUI6 762 aa17.32■□□□□ 0.36
LINC00458-202ENST00000427299 SPDYE4A6NLX3 237 aa17.27■□□□□ 0.36
LINC00458-202ENST00000427299 C19orf67A6NJJ6 358 aa17.25■□□□□ 0.35
LINC00458-202ENST00000427299 STAG3Q9UJ98 1225 aa17.11■□□□□ 0.33
LINC00458-202ENST00000427299 FARP1Q9Y4F1 1045 aaPredicted RBP17.1■□□□□ 0.33
LINC00458-202ENST00000427299 GABBR2O75899 941 aa17.01■□□□□ 0.31
LINC00458-202ENST00000427299 CREBZFQ9NS37 354 aa17.01■□□□□ 0.31
LINC00458-202ENST00000427299 CD44P16070 742 aaKnown RBP16.96■□□□□ 0.31
LINC00458-202ENST00000427299 PROM2Q8N271 834 aa16.94■□□□□ 0.3
LINC00458-202ENST00000427299 MNX1P50219 401 aaPredicted RBP16.76■□□□□ 0.27
LINC00458-202ENST00000427299 ZNF579Q8NAF0 562 aaKnown RBP16.73■□□□□ 0.27
LINC00458-202ENST00000427299 CLCN6P51797 869 aa16.72■□□□□ 0.27
LINC00458-202ENST00000427299 ZRANB1Q9UGI0 708 aa16.72■□□□□ 0.27
LINC00458-202ENST00000427299 LHX8Q68G74 356 aa16.69■□□□□ 0.26
LINC00458-202ENST00000427299 POTEIP0CG38 1075 aa16.68■□□□□ 0.26
LINC00458-202ENST00000427299 NPM1P06748 294 aaKnown RBP eCLIP16.66■□□□□ 0.26
LINC00458-202ENST00000427299 PAK3O75914 559 aaPredicted RBP16.58■□□□□ 0.24
LINC00458-202ENST00000427299 PHF12Q96QT6 1004 aa16.52■□□□□ 0.24
LINC00458-202ENST00000427299 GALR2O43603 387 aaPredicted RBP16.5■□□□□ 0.23
LINC00458-202ENST00000427299 FKBP8Q14318 412 aa16.49■□□□□ 0.23
LINC00458-202ENST00000427299 DCBLD2Q96PD2 775 aa16.49■□□□□ 0.23
LINC00458-202ENST00000427299 MIER1Q8N108 512 aa16.44■□□□□ 0.22
LINC00458-202ENST00000427299 PLEKHG5O94827 1062 aa16.39■□□□□ 0.21
LINC00458-202ENST00000427299 TSPYL2Q9H2G4 693 aaPredicted RBP16.36■□□□□ 0.21
LINC00458-202ENST00000427299 CCDC61Q9Y6R9 512 aa16.33■□□□□ 0.2
LINC00458-202ENST00000427299 PLCD3Q8N3E9 789 aa16.32■□□□□ 0.2
LINC00458-202ENST00000427299 MS4A3Q96HJ5 214 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms