RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 NISCHQ9Y2I1 1504 aa9□□□□□ -0.97
PTPN13-201ENST00000316707 HRCP23327 699 aa7.94□□□□□ -1.14
PTPN13-201ENST00000316707 SUPT5HO00267 1087 aaKnown RBP7.85□□□□□ -1.15
PTPN13-201ENST00000316707 PELP1Q8IZL8 1130 aaKnown RBP7.83□□□□□ -1.16
PTPN13-201ENST00000316707 CHIC1Q5VXU3 224 aa7.77□□□□□ -1.17
PTPN13-201ENST00000316707 SHROOM4Q9ULL8 1493 aa7.77□□□□□ -1.17
PTPN13-201ENST00000316707 PCGF6Q9BYE7 350 aa7.72□□□□□ -1.17
PTPN13-201ENST00000316707 ZEB1P37275 1124 aaPredicted RBP7.7□□□□□ -1.18
PTPN13-201ENST00000316707 DCAF1Q9Y4B6 1507 aa7.67□□□□□ -1.18
PTPN13-201ENST00000316707 ZCCHC6Q5VYS8 1495 aaKnown RBP7.65□□□□□ -1.18
PTPN13-201ENST00000316707 TRIM26Q12899 539 aaPredicted RBP7.62□□□□□ -1.19
PTPN13-201ENST00000316707 MYT1Q01538 1121 aa7.6□□□□□ -1.19
PTPN13-201ENST00000316707 PPARGC1BQ86YN6 1023 aaKnown RBP7.55□□□□□ -1.2
PTPN13-201ENST00000316707 MYO15BQ96JP2 1530 aa7.55□□□□□ -1.2
PTPN13-201ENST00000316707 DCAF8L2P0C7V8 631 aa7.47□□□□□ -1.21
PTPN13-201ENST00000316707 CCDC180Q9P1Z9 1646 aa7.44□□□□□ -1.22
PTPN13-201ENST00000316707 LOC105371045A0A1W2PR82 267 aa7.43□□□□□ -1.22
PTPN13-201ENST00000316707 CENPBP07199 599 aaPredicted RBP7.39□□□□□ -1.23
PTPN13-201ENST00000316707 TRIM41Q8WV44 630 aa7.37□□□□□ -1.23
PTPN13-201ENST00000316707 SCAF1Q9H7N4 1312 aaKnown RBP7.35□□□□□ -1.23
PTPN13-201ENST00000316707 ACIN1Q9UKV3 1341 aaKnown RBP7.33□□□□□ -1.24
PTPN13-201ENST00000316707 CCER1Q8TC90 406 aaPredicted RBP7.25□□□□□ -1.25
PTPN13-201ENST00000316707 RSF1Q96T23 1441 aaPredicted RBP7.24□□□□□ -1.25
PTPN13-201ENST00000316707 DIEXFQ68CQ4 756 aaKnown RBP7.22□□□□□ -1.25
PTPN13-201ENST00000316707 FAM9AQ8IZU1 332 aaPredicted RBP7.21□□□□□ -1.25
PTPN13-201ENST00000316707 NEUROD1Q13562 356 aa7.21□□□□□ -1.26
PTPN13-201ENST00000316707 ABCC9O60706 1549 aa7.2□□□□□ -1.26
PTPN13-201ENST00000316707 GTF3C3Q9Y5Q9 886 aa7.2□□□□□ -1.26
PTPN13-201ENST00000316707 CLSPNQ9HAW4 1339 aa7.18□□□□□ -1.26
PTPN13-201ENST00000316707 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.15□□□□□ -1.26
PTPN13-201ENST00000316707 RB1CC1Q8TDY2 1594 aa7.15□□□□□ -1.27
PTPN13-201ENST00000316707 ZNF316A6NFI3 1004 aaPredicted RBP7.14□□□□□ -1.27
PTPN13-201ENST00000316707 WRNQ14191 1432 aaPredicted RBP eCLIP7.13□□□□□ -1.27
PTPN13-201ENST00000316707 TTBK1Q5TCY1 1321 aaPredicted RBP7.12□□□□□ -1.27
PTPN13-201ENST00000316707 EEA1Q15075 1411 aa7.09□□□□□ -1.27
PTPN13-201ENST00000316707 TNIKQ9UKE5 1360 aa7.06□□□□□ -1.28
PTPN13-201ENST00000316707 EHMT2Q96KQ7 1210 aa7.03□□□□□ -1.28
PTPN13-201ENST00000316707 CSRNP3Q8WYN3 585 aa7.02□□□□□ -1.29
PTPN13-201ENST00000316707 CEP162Q5TB80 1403 aa7.01□□□□□ -1.29
PTPN13-201ENST00000316707 APLP2Q06481 763 aa7.01□□□□□ -1.29
PTPN13-201ENST00000316707 UBTFP17480 764 aaKnown RBP6.99□□□□□ -1.29
PTPN13-201ENST00000316707 YTHDC1Q96MU7 727 aaKnown RBP6.98□□□□□ -1.29
PTPN13-201ENST00000316707 MIER1Q8N108 512 aa6.97□□□□□ -1.29
PTPN13-201ENST00000316707 SCRIBQ14160 1630 aa6.96□□□□□ -1.29
PTPN13-201ENST00000316707 CECR2Q9BXF3 1484 aa6.95□□□□□ -1.3
PTPN13-201ENST00000316707 NACADO15069 1562 aa6.95□□□□□ -1.3
PTPN13-201ENST00000316707 MROH2BQ7Z745 1585 aa6.94□□□□□ -1.3
PTPN13-201ENST00000316707 GOLGA3Q08378 1498 aa6.94□□□□□ -1.3
PTPN13-201ENST00000316707 BAZ1AQ9NRL2 1556 aaPredicted RBP6.93□□□□□ -1.3
PTPN13-201ENST00000316707 HNRNPUL2Q1KMD3 747 aaKnown RBP6.91□□□□□ -1.3
PTPN13-201ENST00000316707 ANP32EQ9BTT0 268 aa6.9□□□□□ -1.3
PTPN13-201ENST00000316707 CEP164Q9UPV0 1460 aa6.89□□□□□ -1.31
PTPN13-201ENST00000316707 CLIP1P30622 1438 aa6.89□□□□□ -1.31
PTPN13-201ENST00000316707 VPS8Q8N3P4 1428 aa6.89□□□□□ -1.31
PTPN13-201ENST00000316707 CCDC88BA6NC98 1476 aa6.88□□□□□ -1.31
PTPN13-201ENST00000316707 SUPT16HQ9Y5B9 1047 aaKnown RBP6.88□□□□□ -1.31
PTPN13-201ENST00000316707 SOGA1O94964 1423 aa6.87□□□□□ -1.31
PTPN13-201ENST00000316707 TOP2AP11388 1531 aaKnown RBP6.85□□□□□ -1.31
PTPN13-201ENST00000316707 NEFLP07196 543 aa6.85□□□□□ -1.31
PTPN13-201ENST00000316707 BAZ1BQ9UIG0 1483 aaKnown RBP6.83□□□□□ -1.32
PTPN13-201ENST00000316707 TSHZ2Q9NRE2 1034 aa6.83□□□□□ -1.32
PTPN13-201ENST00000316707 TIMELESSQ9UNS1 1208 aa6.83□□□□□ -1.32
PTPN13-201ENST00000316707 EIF4G1Q04637 1599 aaKnown RBP6.83□□□□□ -1.32
PTPN13-201ENST00000316707 MYT1LQ9UL68 1186 aa6.82□□□□□ -1.32
PTPN13-201ENST00000316707 DHX57Q6P158 1386 aaKnown RBP6.81□□□□□ -1.32
PTPN13-201ENST00000316707 WIZO95785 1651 aa6.78□□□□□ -1.32
PTPN13-201ENST00000316707 ABCC8Q09428 1581 aa6.77□□□□□ -1.33
PTPN13-201ENST00000316707 CCER2I3L3R5 266 aa6.77□□□□□ -1.33
PTPN13-201ENST00000316707 BCL11AQ9H165 835 aa6.76□□□□□ -1.33
PTPN13-201ENST00000316707 SMARCA2P51531 1590 aa6.76□□□□□ -1.33
PTPN13-201ENST00000316707 KIF21BO75037 1637 aa6.75□□□□□ -1.33
PTPN13-201ENST00000316707 ERICH6BQ5W0A0 696 aa6.75□□□□□ -1.33
PTPN13-201ENST00000316707 RUSC2Q8N2Y8 1516 aa6.73□□□□□ -1.33
PTPN13-201ENST00000316707 CUX2O14529 1486 aa6.73□□□□□ -1.33
PTPN13-201ENST00000316707 RRBP1Q9P2E9 1410 aaKnown RBP6.73□□□□□ -1.33
PTPN13-201ENST00000316707 FKBP8Q14318 412 aa6.72□□□□□ -1.33
PTPN13-201ENST00000316707 CCNB3Q8WWL7 1395 aa6.72□□□□□ -1.33
PTPN13-201ENST00000316707 SMARCA4P51532 1647 aa6.71□□□□□ -1.33
PTPN13-201ENST00000316707 ANP32CO43423 234 aa6.71□□□□□ -1.34
PTPN13-201ENST00000316707 ERICH6Q7L0X2 663 aa6.71□□□□□ -1.34
PTPN13-201ENST00000316707 RBM19Q9Y4C8 960 aaKnown RBP6.71□□□□□ -1.34
PTPN13-201ENST00000316707 FANCIQ9NVI1 1328 aa6.69□□□□□ -1.34
PTPN13-201ENST00000316707 RAPGEF2Q9Y4G8 1499 aa6.69□□□□□ -1.34
PTPN13-201ENST00000316707 CDK11AQ9UQ88 783 aaPredicted RBP6.69□□□□□ -1.34
PTPN13-201ENST00000316707 ERICH3Q5RHP9 1530 aa6.68□□□□□ -1.34
PTPN13-201ENST00000316707 PRXQ9BXM0 1461 aa6.68□□□□□ -1.34
PTPN13-201ENST00000316707 BCANQ96GW7 911 aa6.67□□□□□ -1.34
PTPN13-201ENST00000316707 DDX10Q13206 875 aaKnown RBP6.66□□□□□ -1.34
PTPN13-201ENST00000316707 KANK4Q5T7N3 995 aaPredicted RBP6.66□□□□□ -1.34
PTPN13-201ENST00000316707 KIF27Q86VH2 1401 aa6.66□□□□□ -1.34
PTPN13-201ENST00000316707 SETD5Q9C0A6 1442 aa6.66□□□□□ -1.34
PTPN13-201ENST00000316707 RANGAP1P46060 587 aaPredicted RBP6.65□□□□□ -1.35
PTPN13-201ENST00000316707 RAB3GAP2Q9H2M9 1393 aa6.64□□□□□ -1.35
PTPN13-201ENST00000316707 PPP1R15AO75807 674 aaPredicted RBP6.64□□□□□ -1.35
PTPN13-201ENST00000316707 PEG3Q9GZU2 1588 aa6.64□□□□□ -1.35
PTPN13-201ENST00000316707 MAP3K1Q13233 1512 aa6.63□□□□□ -1.35
PTPN13-201ENST00000316707 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.61□□□□□ -1.35
PTPN13-201ENST00000316707 ITGAEP38570 1179 aa6.61□□□□□ -1.35
PTPN13-201ENST00000316707 PPP4R2Q9NY27 417 aa6.61□□□□□ -1.35
PTPN13-201ENST00000316707 ARAP1Q96P48 1450 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms