Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 AC073130.3-201ENST00000624389 2278 ntBASIC19.64■□□□□ 0.73
DKK3Q9UBP4 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
DKK3Q9UBP4 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 AC026471.5-201ENST00000615068 467 ntBASIC19.63■□□□□ 0.73
DKK3Q9UBP4 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DKK3Q9UBP4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 CR392000.1-201ENST00000624770 1228 ntBASIC19.62■□□□□ 0.73
DKK3Q9UBP4 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.62■□□□□ 0.73
DKK3Q9UBP4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.61■□□□□ 0.73
DKK3Q9UBP4 AL355355.2-201ENST00000442321 338 ntBASIC19.61■□□□□ 0.73
DKK3Q9UBP4 NUDT16P1-203ENST00000513809 620 ntBASIC19.61■□□□□ 0.73
DKK3Q9UBP4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DKK3Q9UBP4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.6■□□□□ 0.73
DKK3Q9UBP4 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms