Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC10.08□□□□□ -0.8
CDC42SE1Q9NRR8 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 LINC00896-202ENST00000609602 2128 ntBASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 USP49-202ENST00000373010 2446 ntTSL 5 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 AC015813.7-201ENST00000623294 581 ntBASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 STK25-205ENST00000405883 1904 ntTSL 2 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 AC007225.1-201ENST00000566331 1836 ntBASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 AC073592.3-201ENST00000625118 1834 ntBASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 C17orf82-201ENST00000623772 1530 ntBASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC10.07□□□□□ -0.8
CDC42SE1Q9NRR8 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 AC022211.2-201ENST00000585075 2527 ntBASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 AC080080.1-201ENST00000625121 2420 ntBASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC10.06□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms