Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 MOK-225ENST00000522867 1883 ntTSL 5 BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 PNN-205ENST00000556530 601 ntTSL 2 BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
RPAP1Q9BWH6 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RPAP1Q9BWH6 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RPAP1Q9BWH6 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RPAP1Q9BWH6 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RPAP1Q9BWH6 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
RPAP1Q9BWH6 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC23.77■■□□□ 1.4
RPAP1Q9BWH6 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RPAP1Q9BWH6 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RPAP1Q9BWH6 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC23.77■■□□□ 1.4
RPAP1Q9BWH6 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC23.77■■□□□ 1.4
RPAP1Q9BWH6 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC23.77■■□□□ 1.4
RPAP1Q9BWH6 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC23.77■■□□□ 1.4
RPAP1Q9BWH6 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 MMP23A-201ENST00000234610 1017 ntBASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 RBM17P1-201ENST00000453646 1190 ntBASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RPAP1Q9BWH6 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
RPAP1Q9BWH6 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 AC145285.6-201ENST00000604632 637 ntBASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC23.74■■□□□ 1.39
RPAP1Q9BWH6 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 REXO1L10P-201ENST00000615707 1290 ntBASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
RPAP1Q9BWH6 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
RPAP1Q9BWH6 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RPAP1Q9BWH6 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
RPAP1Q9BWH6 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
RPAP1Q9BWH6 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RPAP1Q9BWH6 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
RPAP1Q9BWH6 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RPAP1Q9BWH6 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms