Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
NPAS1Q99742 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.8■□□□□ 0.44
NPAS1Q99742 AC239809.2-201ENST00000415381 517 ntBASIC17.8■□□□□ 0.44
NPAS1Q99742 GCSHP5-201ENST00000443090 522 ntBASIC17.8■□□□□ 0.44
NPAS1Q99742 AL158047.1-201ENST00000445918 881 ntBASIC17.8■□□□□ 0.44
NPAS1Q99742 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.8■□□□□ 0.44
NPAS1Q99742 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.8■□□□□ 0.44
NPAS1Q99742 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.8■□□□□ 0.44
NPAS1Q99742 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.8■□□□□ 0.44
NPAS1Q99742 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.8■□□□□ 0.44
NPAS1Q99742 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.8■□□□□ 0.44
NPAS1Q99742 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
NPAS1Q99742 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.8■□□□□ 0.44
NPAS1Q99742 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
NPAS1Q99742 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.79■□□□□ 0.44
NPAS1Q99742 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
NPAS1Q99742 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.79■□□□□ 0.44
NPAS1Q99742 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.79■□□□□ 0.44
NPAS1Q99742 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
NPAS1Q99742 AP006587.1-201ENST00000534129 1502 ntBASIC17.79■□□□□ 0.44
NPAS1Q99742 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.79■□□□□ 0.44
NPAS1Q99742 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
NPAS1Q99742 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
NPAS1Q99742 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.79■□□□□ 0.44
NPAS1Q99742 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.79■□□□□ 0.44
NPAS1Q99742 AC142381.4-202ENST00000563973 229 ntBASIC17.79■□□□□ 0.44
NPAS1Q99742 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.79■□□□□ 0.44
NPAS1Q99742 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.79■□□□□ 0.44
NPAS1Q99742 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.79■□□□□ 0.44
NPAS1Q99742 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.79■□□□□ 0.44
NPAS1Q99742 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.79■□□□□ 0.44
NPAS1Q99742 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.79■□□□□ 0.44
NPAS1Q99742 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.79■□□□□ 0.44
NPAS1Q99742 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
NPAS1Q99742 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NPAS1Q99742 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.79■□□□□ 0.44
NPAS1Q99742 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
NPAS1Q99742 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
NPAS1Q99742 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
NPAS1Q99742 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NPAS1Q99742 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NPAS1Q99742 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.78■□□□□ 0.44
NPAS1Q99742 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NPAS1Q99742 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
NPAS1Q99742 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NPAS1Q99742 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.78■□□□□ 0.44
NPAS1Q99742 NBPF21P-201ENST00000425093 1451 ntBASIC17.78■□□□□ 0.44
NPAS1Q99742 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NPAS1Q99742 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NPAS1Q99742 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
NPAS1Q99742 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
NPAS1Q99742 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.78■□□□□ 0.44
NPAS1Q99742 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
NPAS1Q99742 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.78■□□□□ 0.44
NPAS1Q99742 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.78■□□□□ 0.44
NPAS1Q99742 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.78■□□□□ 0.44
NPAS1Q99742 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.78■□□□□ 0.44
NPAS1Q99742 PRKY-204ENST00000533551 1019 ntBASIC17.78■□□□□ 0.44
NPAS1Q99742 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.78■□□□□ 0.44
NPAS1Q99742 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NPAS1Q99742 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NPAS1Q99742 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NPAS1Q99742 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
NPAS1Q99742 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NPAS1Q99742 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
NPAS1Q99742 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NPAS1Q99742 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.77■□□□□ 0.44
NPAS1Q99742 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NPAS1Q99742 TREX1-205ENST00000625293 1783 ntBASIC17.77■□□□□ 0.44
NPAS1Q99742 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NPAS1Q99742 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
NPAS1Q99742 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms