Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
PTCHD1Q96NR3 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 MIR718-201ENST00000390190 70 ntBASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 RPS2P4-201ENST00000476944 856 ntBASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 RARRES2P10-201ENST00000564312 460 ntBASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD1Q96NR3 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 TUBB8P6-201ENST00000436895 1288 ntBASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 HTR7P1-201ENST00000538670 1336 ntBASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 TMEM179-206ENST00000616017 1645 ntBASIC18.41■□□□□ 0.54
PTCHD1Q96NR3 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 AL135905.2-201ENST00000584934 1404 ntBASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms