Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CCDC42Q96M95 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC42Q96M95 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC42Q96M95 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC42Q96M95 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC42Q96M95 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
CCDC42Q96M95 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC42Q96M95 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC42Q96M95 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC42Q96M95 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC42Q96M95 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC42Q96M95 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC42Q96M95 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.06■□□□□ 0.96
CCDC42Q96M95 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC42Q96M95 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC42Q96M95 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC42Q96M95 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC42Q96M95 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC42Q96M95 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
CCDC42Q96M95 AC007322.1-201ENST00000426983 750 ntBASIC21.06■□□□□ 0.96
CCDC42Q96M95 AC006015.1-201ENST00000429970 570 ntBASIC21.06■□□□□ 0.96
CCDC42Q96M95 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC42Q96M95 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC42Q96M95 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC42Q96M95 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC42Q96M95 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.06■□□□□ 0.96
CCDC42Q96M95 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC42Q96M95 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC42Q96M95 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CCDC42Q96M95 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC42Q96M95 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.05■□□□□ 0.96
CCDC42Q96M95 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC42Q96M95 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC42Q96M95 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC42Q96M95 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC42Q96M95 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC42Q96M95 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC42Q96M95 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC42Q96M95 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC42Q96M95 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC42Q96M95 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.05■□□□□ 0.96
CCDC42Q96M95 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC42Q96M95 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC42Q96M95 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC42Q96M95 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC42Q96M95 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC42Q96M95 AC018553.1-201ENST00000616682 1458 ntBASIC21.05■□□□□ 0.96
CCDC42Q96M95 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC42Q96M95 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC42Q96M95 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC42Q96M95 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC42Q96M95 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC42Q96M95 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC42Q96M95 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC42Q96M95 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC42Q96M95 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 BID-214ENST00000617586 542 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC42Q96M95 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC42Q96M95 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC42Q96M95 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC42Q96M95 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC42Q96M95 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC42Q96M95 KRT17P1-201ENST00000399211 1546 ntBASIC21.04■□□□□ 0.96
CCDC42Q96M95 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC42Q96M95 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC42Q96M95 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CCDC42Q96M95 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC42Q96M95 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
CCDC42Q96M95 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC42Q96M95 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC42Q96M95 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC42Q96M95 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC42Q96M95 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC42Q96M95 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.03■□□□□ 0.96
CCDC42Q96M95 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC42Q96M95 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC42Q96M95 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CCDC42Q96M95 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CCDC42Q96M95 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC42Q96M95 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC42Q96M95 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC42Q96M95 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC42Q96M95 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC42Q96M95 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC42Q96M95 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CCDC42Q96M95 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms