Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MESTP1-201ENST00000404287 994 ntBASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 ATP5G1P1-201ENST00000448724 379 ntBASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 AL512408.1-201ENST00000569378 2000 ntBASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 CYP2D8P-201ENST00000433633 1490 ntBASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 AP005212.1-201ENST00000581547 1997 ntBASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 B3GAT3P1-201ENST00000471720 806 ntBASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 AC011506.1-201ENST00000474329 610 ntBASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 AC010947.1-201ENST00000623454 693 ntBASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 HLA-A-209ENST00000638375 975 ntBASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HDDC3Q8N4P3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDDC3Q8N4P3 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 KRT8P8-201ENST00000434750 1448 ntBASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 AC073508.3-201ENST00000619697 1419 ntBASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms