Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
USP48Q86UV5 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP48Q86UV5 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
USP48Q86UV5 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
USP48Q86UV5 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP48Q86UV5 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
USP48Q86UV5 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP48Q86UV5 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC23.95■■□□□ 1.42
USP48Q86UV5 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP48Q86UV5 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC23.95■■□□□ 1.42
USP48Q86UV5 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.95■■□□□ 1.42
USP48Q86UV5 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP48Q86UV5 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
USP48Q86UV5 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USP48Q86UV5 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
USP48Q86UV5 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP48Q86UV5 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC23.94■■□□□ 1.42
USP48Q86UV5 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC23.94■■□□□ 1.42
USP48Q86UV5 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC23.94■■□□□ 1.42
USP48Q86UV5 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP48Q86UV5 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP48Q86UV5 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC23.94■■□□□ 1.42
USP48Q86UV5 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC23.94■■□□□ 1.42
USP48Q86UV5 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC23.94■■□□□ 1.42
USP48Q86UV5 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP48Q86UV5 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP48Q86UV5 KSR1P1-201ENST00000446298 240 ntBASIC23.94■■□□□ 1.42
USP48Q86UV5 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC23.94■■□□□ 1.42
USP48Q86UV5 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC23.94■■□□□ 1.42
USP48Q86UV5 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC23.94■■□□□ 1.42
USP48Q86UV5 CLN6-221ENST00000637494 765 ntTSL 5 BASIC23.94■■□□□ 1.42
USP48Q86UV5 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP48Q86UV5 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP48Q86UV5 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP48Q86UV5 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP48Q86UV5 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP48Q86UV5 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
USP48Q86UV5 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USP48Q86UV5 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP48Q86UV5 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC23.93■■□□□ 1.42
USP48Q86UV5 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USP48Q86UV5 AL512408.1-201ENST00000569378 2000 ntBASIC23.93■■□□□ 1.42
USP48Q86UV5 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USP48Q86UV5 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC23.93■■□□□ 1.42
USP48Q86UV5 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP48Q86UV5 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC23.93■■□□□ 1.42
USP48Q86UV5 LIN28AP1-201ENST00000429574 405 ntBASIC23.93■■□□□ 1.42
USP48Q86UV5 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC23.93■■□□□ 1.42
USP48Q86UV5 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC23.93■■□□□ 1.42
USP48Q86UV5 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USP48Q86UV5 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC23.93■■□□□ 1.42
USP48Q86UV5 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC23.93■■□□□ 1.42
USP48Q86UV5 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC23.93■■□□□ 1.42
USP48Q86UV5 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP48Q86UV5 AL162377.1-201ENST00000618844 1793 ntBASIC23.93■■□□□ 1.42
USP48Q86UV5 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC23.93■■□□□ 1.42
USP48Q86UV5 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
USP48Q86UV5 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP48Q86UV5 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP48Q86UV5 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USP48Q86UV5 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC23.92■■□□□ 1.42
USP48Q86UV5 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC23.92■■□□□ 1.42
USP48Q86UV5 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC23.92■■□□□ 1.42
USP48Q86UV5 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC23.92■■□□□ 1.42
USP48Q86UV5 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC23.92■■□□□ 1.42
USP48Q86UV5 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USP48Q86UV5 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
USP48Q86UV5 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
USP48Q86UV5 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC23.92■■□□□ 1.42
USP48Q86UV5 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USP48Q86UV5 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC23.92■■□□□ 1.42
USP48Q86UV5 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC23.92■■□□□ 1.42
USP48Q86UV5 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USP48Q86UV5 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP48Q86UV5 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC23.91■■□□□ 1.42
USP48Q86UV5 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
USP48Q86UV5 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.91■■□□□ 1.42
USP48Q86UV5 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP48Q86UV5 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC23.91■■□□□ 1.42
USP48Q86UV5 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP48Q86UV5 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
USP48Q86UV5 GUK1-204ENST00000366721 689 ntTSL 3 BASIC23.91■■□□□ 1.42
USP48Q86UV5 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
USP48Q86UV5 NIFKP9-201ENST00000419265 221 ntBASIC23.91■■□□□ 1.42
USP48Q86UV5 UPK3BP1-201ENST00000428678 509 ntBASIC23.91■■□□□ 1.42
USP48Q86UV5 ATP5G1P1-201ENST00000448724 379 ntBASIC23.91■■□□□ 1.42
USP48Q86UV5 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC23.91■■□□□ 1.42
USP48Q86UV5 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC23.91■■□□□ 1.42
USP48Q86UV5 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC23.91■■□□□ 1.42
USP48Q86UV5 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC23.91■■□□□ 1.42
USP48Q86UV5 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC23.91■■□□□ 1.42
USP48Q86UV5 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP48Q86UV5 FP700111.2-201ENST00000619190 1892 ntBASIC23.91■■□□□ 1.42
USP48Q86UV5 KRT16P1-201ENST00000399124 1418 ntBASIC23.91■■□□□ 1.42
USP48Q86UV5 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP48Q86UV5 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP48Q86UV5 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC23.91■■□□□ 1.42
USP48Q86UV5 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP48Q86UV5 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
USP48Q86UV5 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms