Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00643Q86TS7 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 CICP6-201ENST00000457191 2729 ntBASIC12.24□□□□□ -0.45
LINC00643Q86TS7 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 CHML-204ENST00000638121 920 ntTSL 2 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 ANKRD26P3-201ENST00000454044 2748 ntBASIC12.24□□□□□ -0.45
LINC00643Q86TS7 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC12.24□□□□□ -0.45
LINC00643Q86TS7 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 AD000864.1-201ENST00000624076 2295 ntBASIC12.23□□□□□ -0.45
LINC00643Q86TS7 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 TP73-202ENST00000354437 2140 ntTSL 5 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 SNAI3-AS1-205ENST00000568633 2096 ntBASIC12.23□□□□□ -0.45
LINC00643Q86TS7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 AL118508.1-201ENST00000613502 2345 ntBASIC12.23□□□□□ -0.45
LINC00643Q86TS7 AC012317.2-201ENST00000623305 2251 ntBASIC12.23□□□□□ -0.45
LINC00643Q86TS7 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 AC008764.6-201ENST00000595909 2069 ntBASIC12.23□□□□□ -0.45
LINC00643Q86TS7 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 AC068418.2-201ENST00000577309 3703 ntBASIC12.23□□□□□ -0.45
LINC00643Q86TS7 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00643Q86TS7 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 F11R-206ENST00000621309 4770 ntTSL 5 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms