Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
RFX3P48380 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX3P48380 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.34■□□□□ 0.53
RFX3P48380 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.34■□□□□ 0.53
RFX3P48380 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX3P48380 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
RFX3P48380 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX3P48380 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFX3P48380 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX3P48380 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX3P48380 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX3P48380 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.34■□□□□ 0.53
RFX3P48380 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX3P48380 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RFX3P48380 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RFX3P48380 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFX3P48380 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFX3P48380 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFX3P48380 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.53
RFX3P48380 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFX3P48380 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFX3P48380 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
RFX3P48380 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.33■□□□□ 0.53
RFX3P48380 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX3P48380 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX3P48380 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.33■□□□□ 0.52
RFX3P48380 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX3P48380 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.33■□□□□ 0.52
RFX3P48380 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX3P48380 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX3P48380 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX3P48380 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX3P48380 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
RFX3P48380 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
RFX3P48380 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.33■□□□□ 0.52
RFX3P48380 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFX3P48380 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX3P48380 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.32■□□□□ 0.52
RFX3P48380 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RFX3P48380 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.32■□□□□ 0.52
RFX3P48380 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.32■□□□□ 0.52
RFX3P48380 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.32■□□□□ 0.52
RFX3P48380 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.32■□□□□ 0.52
RFX3P48380 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX3P48380 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RFX3P48380 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX3P48380 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX3P48380 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
RFX3P48380 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.32■□□□□ 0.52
RFX3P48380 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RFX3P48380 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RFX3P48380 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.31■□□□□ 0.52
RFX3P48380 AL158211.5-201ENST00000623583 2518 ntBASIC18.31■□□□□ 0.52
RFX3P48380 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX3P48380 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
RFX3P48380 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX3P48380 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX3P48380 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.31■□□□□ 0.52
RFX3P48380 RPS2P52-201ENST00000469610 820 ntBASIC18.31■□□□□ 0.52
RFX3P48380 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.31■□□□□ 0.52
RFX3P48380 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
RFX3P48380 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
RFX3P48380 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.31■□□□□ 0.52
RFX3P48380 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 TMEM179-206ENST00000616017 1645 ntBASIC18.31■□□□□ 0.52
RFX3P48380 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RFX3P48380 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.3■□□□□ 0.52
RFX3P48380 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RFX3P48380 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms