Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB1P09429 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB1P09429 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
HMGB1P09429 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB1P09429 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.07■■□□□ 1.28
HMGB1P09429 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
HMGB1P09429 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB1P09429 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC23.07■■□□□ 1.28
HMGB1P09429 MMAB-206ENST00000540016 945 ntTSL 3 BASIC23.07■■□□□ 1.28
HMGB1P09429 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.07■■□□□ 1.28
HMGB1P09429 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC23.07■■□□□ 1.28
HMGB1P09429 TBCB-214ENST00000629269 413 ntTSL 5 BASIC23.07■■□□□ 1.28
HMGB1P09429 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
HMGB1P09429 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB1P09429 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB1P09429 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB1P09429 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB1P09429 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB1P09429 AC007952.6-201ENST00000573168 2673 ntBASIC23.06■■□□□ 1.28
HMGB1P09429 AC003957.1-201ENST00000625108 2673 ntBASIC23.06■■□□□ 1.28
HMGB1P09429 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGB1P09429 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC23.06■■□□□ 1.28
HMGB1P09429 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB1P09429 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB1P09429 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
HMGB1P09429 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB1P09429 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB1P09429 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGB1P09429 TUBB8P6-201ENST00000436895 1288 ntBASIC23.06■■□□□ 1.28
HMGB1P09429 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC23.06■■□□□ 1.28
HMGB1P09429 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB1P09429 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC23.06■■□□□ 1.28
HMGB1P09429 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGB1P09429 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB1P09429 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB1P09429 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC23.06■■□□□ 1.28
HMGB1P09429 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC23.06■■□□□ 1.28
HMGB1P09429 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB1P09429 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB1P09429 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGB1P09429 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB1P09429 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGB1P09429 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC23.05■■□□□ 1.28
HMGB1P09429 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
HMGB1P09429 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGB1P09429 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC23.05■■□□□ 1.28
HMGB1P09429 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC23.05■■□□□ 1.28
HMGB1P09429 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
HMGB1P09429 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC23.05■■□□□ 1.28
HMGB1P09429 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC23.05■■□□□ 1.28
HMGB1P09429 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGB1P09429 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC23.05■■□□□ 1.28
HMGB1P09429 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC23.05■■□□□ 1.28
HMGB1P09429 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
HMGB1P09429 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.05■■□□□ 1.28
HMGB1P09429 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC23.05■■□□□ 1.28
HMGB1P09429 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC23.05■■□□□ 1.28
HMGB1P09429 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGB1P09429 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGB1P09429 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGB1P09429 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC23.05■■□□□ 1.28
HMGB1P09429 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
HMGB1P09429 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGB1P09429 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC23.05■■□□□ 1.28
HMGB1P09429 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGB1P09429 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
HMGB1P09429 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC23.04■■□□□ 1.28
HMGB1P09429 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
HMGB1P09429 RHOD-202ENST00000532559 538 ntTSL 3 BASIC23.04■■□□□ 1.28
HMGB1P09429 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC23.04■■□□□ 1.28
HMGB1P09429 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 AC069544.1-201ENST00000609399 999 ntBASIC23.04■■□□□ 1.28
HMGB1P09429 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
HMGB1P09429 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC23.04■■□□□ 1.28
HMGB1P09429 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC23.04■■□□□ 1.28
HMGB1P09429 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC23.04■■□□□ 1.28
HMGB1P09429 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC23.04■■□□□ 1.28
HMGB1P09429 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC23.04■■□□□ 1.28
HMGB1P09429 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
HMGB1P09429 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB1P09429 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGB1P09429 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC23.03■■□□□ 1.28
HMGB1P09429 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC23.03■■□□□ 1.28
HMGB1P09429 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HMGB1P09429 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGB1P09429 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGB1P09429 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HMGB1P09429 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms