Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CHKB-CPT1BH3BT56 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 OR2I1P-209ENST00000641730 5365 ntBASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 HLA-V-202ENST00000446817 847 ntBASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
CHKB-CPT1BH3BT56 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 SMPD5-203ENST00000639008 1464 ntBASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 AC025884.2-201ENST00000553429 711 ntBASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 AC021231.2-201ENST00000594613 730 ntBASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
CHKB-CPT1BH3BT56 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC10.86□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms