Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AC097658.1-201ENST00000475555 843 ntBASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AL049597.2-201ENST00000565575 961 ntBASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 RN7SL850P-201ENST00000579959 291 ntBASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AC120498.9-201ENST00000339021 3867 ntBASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 SLC29A4P2-201ENST00000504749 1089 ntBASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SENP3-EIF4A1A0A087X0R7 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC26.33■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC26.33■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 HES2-205ENST00000487437 968 ntTSL 3 BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 AC092368.3-202ENST00000574180 1591 ntBASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 STK25-204ENST00000405585 1643 ntTSL 2 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CRK-204ENST00000574295 1391 ntTSL 5 BASIC26.31■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 ADM-207ENST00000530439 1839 ntTSL 2 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 AC087499.1-201ENST00000418141 1075 ntBASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 AP003097.1-201ENST00000530657 1135 ntBASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms