Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC4.3□□□□□ -1.72
SDCBPO00560 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDCBPO00560 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDCBPO00560 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.3□□□□□ -1.72
SDCBPO00560 ZNF652P1-201ENST00000442420 1309 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.3□□□□□ -1.72
SDCBPO00560 RNA5SP90-201ENST00000364801 99 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SDCBPO00560 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDCBPO00560 SNORA67-201ENST00000384423 137 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SDCBPO00560 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SDCBPO00560 AC013442.1-201ENST00000397347 228 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.3□□□□□ -1.72
SDCBPO00560 RN7SKP59-201ENST00000410520 314 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC4.3□□□□□ -1.72
SDCBPO00560 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.3□□□□□ -1.72
SDCBPO00560 AL389925.1-201ENST00000432257 728 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 AL136455.1-201ENST00000441083 1240 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC4.3□□□□□ -1.72
SDCBPO00560 AC020779.1-201ENST00000478757 796 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.3□□□□□ -1.72
SDCBPO00560 AC097173.1-201ENST00000505862 819 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 RNA5SP362-201ENST00000516048 118 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 RNA5SP249-201ENST00000516127 99 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
SDCBPO00560 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC4.3□□□□□ -1.72
SDCBPO00560 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.3□□□□□ -1.72
SDCBPO00560 AGGF1P9-201ENST00000561884 913 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.3□□□□□ -1.72
SDCBPO00560 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.3□□□□□ -1.72
SDCBPO00560 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC4.3□□□□□ -1.72
SDCBPO00560 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC4.3□□□□□ -1.72
SDCBPO00560 AC007204.2-201ENST00000615022 616 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 AC015871.5-202ENST00000623252 701 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.3□□□□□ -1.72
SDCBPO00560 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDCBPO00560 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
SDCBPO00560 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.3□□□□□ -1.72
SDCBPO00560 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
SDCBPO00560 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.3□□□□□ -1.72
SDCBPO00560 LINC01355-201ENST00000566551 5444 ntBASIC4.3□□□□□ -1.72
SDCBPO00560 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SDCBPO00560 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SDCBPO00560 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
SDCBPO00560 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.29□□□□□ -1.72
SDCBPO00560 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
SDCBPO00560 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SDCBPO00560 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
SDCBPO00560 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SDCBPO00560 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
SDCBPO00560 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SDCBPO00560 RNU1-146P-201ENST00000364015 165 ntBASIC4.29□□□□□ -1.72
SDCBPO00560 MIR143-201ENST00000385300 106 ntBASIC4.29□□□□□ -1.72
SDCBPO00560 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.29□□□□□ -1.72
SDCBPO00560 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.29□□□□□ -1.72
SDCBPO00560 COX6CP13-201ENST00000428703 226 ntBASIC4.29□□□□□ -1.72
SDCBPO00560 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC4.29□□□□□ -1.72
SDCBPO00560 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC4.29□□□□□ -1.72
SDCBPO00560 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC4.29□□□□□ -1.72
SDCBPO00560 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SDCBPO00560 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC4.29□□□□□ -1.72
SDCBPO00560 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC4.29□□□□□ -1.72
SDCBPO00560 SIAH1P1-201ENST00000479411 923 ntBASIC4.29□□□□□ -1.72
SDCBPO00560 RPL7P39-201ENST00000481157 744 ntBASIC4.29□□□□□ -1.72
SDCBPO00560 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.29□□□□□ -1.72
SDCBPO00560 GTF2F2P1-201ENST00000511083 675 ntBASIC4.29□□□□□ -1.72
SDCBPO00560 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC4.29□□□□□ -1.72
SDCBPO00560 BX510359.5-201ENST00000515651 304 ntBASIC4.29□□□□□ -1.72
SDCBPO00560 RNA5SP373-201ENST00000517271 95 ntBASIC4.29□□□□□ -1.72
SDCBPO00560 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.29□□□□□ -1.72
SDCBPO00560 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.29□□□□□ -1.72
SDCBPO00560 AC126177.5-201ENST00000549599 178 ntBASIC4.29□□□□□ -1.72
SDCBPO00560 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.29□□□□□ -1.72
SDCBPO00560 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.29□□□□□ -1.72
SDCBPO00560 AC135068.12-201ENST00000637370 931 ntBASIC4.29□□□□□ -1.72
SDCBPO00560 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SDCBPO00560 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.29□□□□□ -1.72
SDCBPO00560 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SDCBPO00560 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SDCBPO00560 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
SDCBPO00560 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SDCBPO00560 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SDCBPO00560 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
SDCBPO00560 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.29□□□□□ -1.72
SDCBPO00560 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.28□□□□□ -1.72
SDCBPO00560 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.28□□□□□ -1.72
SDCBPO00560 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
SDCBPO00560 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
SDCBPO00560 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.28□□□□□ -1.72
SDCBPO00560 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
SDCBPO00560 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SDCBPO00560 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SDCBPO00560 SALL4P2-201ENST00000423288 2910 ntBASIC4.28□□□□□ -1.72
SDCBPO00560 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SDCBPO00560 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.28□□□□□ -1.72
SDCBPO00560 UBBP2-201ENST00000376781 231 ntBASIC4.28□□□□□ -1.72
SDCBPO00560 EI24P3-201ENST00000399046 1062 ntBASIC4.28□□□□□ -1.72
SDCBPO00560 OR3A2-201ENST00000408891 1076 ntBASIC4.28□□□□□ -1.72
SDCBPO00560 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms